Package: EpiStrainDynamics
Title: Infer temporal trends of multiple pathogens
Version: 0.1.0
Authors@R: 
    c(person("Saras", "Windecker", email = "saras.windecker@gmail.com", 
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-4870-8353")),
      person("Oliver", "Eales", role = "aut",
        comment = c(ORCID = "0000-0002-8086-4495")),
      person("James", "McCaw", role = "aut",
        comment = c(ORCID = "0000-0002-2452-3098")),
      person("Freya", "Shearer", role = "aut",
        comment = c(ORCID = "0000-0001-9600-3473")),
      person("Milad", "Kharratzadeh", role = "ctb"),
      person("Sangeeta", "Bhatia", role = "rev"),
      person("Joshua", "Lambert", role = "rev")
    )
Description: 'EpiStrainDynamics' is a statistical framework developed
        for inferring temporal trends of multiple pathogens from
        routinely collected surveillance data.
BugReports: https://github.com/ropensci/EpiStrainDynamics/issues
License: Apache License 2.0
URL: https://docs.ropensci.org/EpiStrainDynamics,
        https://github.com/ropensci/EpiStrainDynamics
Encoding: UTF-8
Language: en
RoxygenNote: 7.3.3
Roxygen: list (markdown = TRUE, roclets = c ("namespace", "rd",
        "srr::srr_stats_roclet"))
Biarch: true
Depends: R (>= 4.1.0)
Imports: bayesplot, cli, dplyr, ggplot2, methods, purrr, Rcpp (>=
        0.12.0), RcppParallel (>= 5.0.1), rlang, rstan (>= 2.18.1),
        rstantools (>= 2.4.0), timetk, tsibble, viridis
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
SystemRequirements: GNU make
Suggests: data.table, knitr, piggyback, rmarkdown, testthat (>= 3.0.0),
        tibble, tibbletime, units, xts, zoo
Config/testthat/edition: 3
Config/testthat/parallel: true
LazyData: true
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libx11-dev
Repository: https://ropensci.r-universe.dev
Date/Publication: 2026-08-15 18:56:02 UTC
RemoteUrl: https://github.com/ropensci/EpiStrainDynamics
RemoteRef: main
RemoteSha: 11ce158cfe1eb7a4df72a1a7f47f602854b78163
NeedsCompilation: yes
Packaged: 2026-08-15 19:14:38 UTC; root
Author: Saras Windecker [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4870-8353>),
  Oliver Eales [aut] (ORCID: <https://orcid.org/0000-0002-8086-4495>),
  James McCaw [aut] (ORCID: <https://orcid.org/0000-0002-2452-3098>),
  Freya Shearer [aut] (ORCID: <https://orcid.org/0000-0001-9600-3473>),
  Milad Kharratzadeh [ctb],
  Sangeeta Bhatia [rev],
  Joshua Lambert [rev]
Maintainer: Saras Windecker <saras.windecker@gmail.com>