# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "EpiStrainDynamics" in publications use:'
type: software
license: Apache-2.0
title: 'EpiStrainDynamics: Infer temporal trends of multiple pathogens'
version: 0.1.0
abstract: '''EpiStrainDynamics'' is a statistical framework developed for inferring
  temporal trends of multiple pathogens from routinely collected surveillance data.'
authors:
- family-names: Windecker
  given-names: Saras
  email: saras.windecker@gmail.com
  orcid: https://orcid.org/0000-0002-4870-8353
- family-names: Eales
  given-names: Oliver
  orcid: https://orcid.org/0000-0002-8086-4495
- family-names: McCaw
  given-names: James
  orcid: https://orcid.org/0000-0002-2452-3098
- family-names: Shearer
  given-names: Freya
  orcid: https://orcid.org/0000-0001-9600-3473
preferred-citation:
  type: manual
  title: Infer temporal trends of multiple pathogens
  authors:
  - family-names: Windecker
    given-names: Saras
    email: saras.windecker@gmail.com
    orcid: https://orcid.org/0000-0002-4870-8353
  - family-names: McCaw
    given-names: James
    orcid: https://orcid.org/0000-0002-2452-3098
  - family-names: Shearer
    given-names: Freya
    orcid: https://orcid.org/0000-0001-9600-3473
  - family-names: Eales
    given-names: Oliver
    orcid: https://orcid.org/0000-0002-8086-4495
  notes: R package
  year: '2025'
  url: https://github.com/ropensci/EpiStrainDynamics
repository: https://ropensci.r-universe.dev
repository-code: https://github.com/ropensci/EpiStrainDynamics
commit: 11ce158cfe1eb7a4df72a1a7f47f602854b78163
url: https://docs.ropensci.org/EpiStrainDynamics
date-released: '2026-08-15'
contact:
- family-names: Windecker
  given-names: Saras
  email: saras.windecker@gmail.com
  orcid: https://orcid.org/0000-0002-4870-8353
references:
- type: article
  title: Inferring temporal trends of multiple pathogens, variants, subtypes or serotypes
    from routine surveillance data
  authors:
  - family-names: Eales
    given-names: Oliver
  - family-names: Windecker
    given-names: Saras
  - family-names: McCaw
    given-names: James
  - family-names: Shearer
    given-names: Freya
  journal: American Journal of Epidemiology
  year: '2025'
  month: '6'
  doi: 10.1093/aje/kwaf119
  start: kwaf119