# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "RAMEN" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'RAMEN: Regional Association of Methylome variability with the Exposome and
  geNome'
version: 2.99.0
doi: 10.1186/s13059-025-03864-4
identifiers:
- type: doi
  value: 10.32614/CRAN.package.RAMEN
- type: url
  value: https://github.com/ropensci/RAMEN/
abstract: RAMEN is an R package which goal is to identify Variable Methylated Loci
  (VML) in microarray DNA methylation data and then, using genome and exposome data,
  identify which individual genetic (G) or environmental (E) or joint (G+E or GxE)
  model better explains the VML variability. This package provides estimates of genetic
  and environmental contribution for each VML, allowing researchers to gain insights
  into the complex interplay between genetics, environment and DNA methylation.
authors:
- family-names: Navarro-Delgado
  given-names: Erick I.
  email: erick.delgado@ubc.ca
  orcid: https://orcid.org/0000-0003-1040-3519
- family-names: Korthauer
  given-names: Keegan
  email: keegan@stat.ubc.ca
  orcid: https://orcid.org/0000-0002-4565-1654
- family-names: Kobor
  given-names: Michael S.
  email: michael.kobor@ubc.ca
  orcid: https://orcid.org/0000-0003-4140-1743
preferred-citation:
  type: article
  title: 'RAMEN: Dissecting individual, additive and interactive gene-environment
    contributions to DNA methylome variability in cord blood'
  authors:
  - family-names: Navarro-Delgado
    given-names: Erick I.
    email: erick.delgado@ubc.ca
    orcid: https://orcid.org/0000-0003-1040-3519
  - family-names: Edwards
    given-names: Karlie
  - family-names: Fu
    given-names: Maggie P.
  - family-names: Merrill
    given-names: Sarah M.
  - family-names: Konwar
    given-names: Chaini
  - family-names: MacIsaac
    given-names: Julie L.
  - family-names: Lin
    given-names: David T.S.
  - family-names: Mandhane
    given-names: Piush
  - family-names: Simons
    given-names: Elinor
  - family-names: Subbarao
    given-names: Padmaja
  - family-names: Moraes
    given-names: Theo J.
  - family-names: Lahti
    given-names: Jari
  - family-names: Miller
    given-names: Gregory E.
  - family-names: Binder
    given-names: Elisabeth B.
  - family-names: Raikkonen
    given-names: Katri
  - family-names: Turvey
    given-names: Stuart E.
  - family-names: Korthauer
    given-names: Keegan
    email: keegan@stat.ubc.ca
    orcid: https://orcid.org/0000-0002-4565-1654
  - family-names: Kobor
    given-names: Michael S.
    email: michael.kobor@ubc.ca
    orcid: https://orcid.org/0000-0003-4140-1743
  journal: Genome Biology
  year: '2025'
  volume: '26'
  issue: '1'
  doi: 10.1186/s13059-025-03864-4
  start: '29'
repository: https://ropensci.r-universe.dev
repository-code: https://github.com/ropensci/RAMEN
commit: 57405c7c8443c0c0039406883902fd8633846da6
url: https://ropensci.github.io/RAMEN/
date-released: '2026-08-29'
contact:
- family-names: Navarro-Delgado
  given-names: Erick I.
  email: erick.delgado@ubc.ca
  orcid: https://orcid.org/0000-0003-1040-3519
references:
- type: manual
  title: 'RAMEN: Regional Association of Methylome variability with the Exposome and
    geNome'
  authors:
  - family-names: Navarro-Delgado
    given-names: Erick I.
  - family-names: Korthauer
    given-names: Keegan
  - family-names: Kobor
    given-names: Michael S.
  notes: R package version 2.99.0
  year: '2025'
  url: https://github.com/ropensci/RAMEN