{
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  "Package": "BaseSet",
  "Title": "Working with Sets the Tidy Way",
  "Version": "1.0.0.9001",
  "Authors@R": "c(\nperson(\"Lluís\", \"Revilla Sancho\", , \"lluis.revilla@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-9747-2570\")),\nperson(\"Zebulun\", \"Arendsee\", role = \"rev\"),\nperson(\"Jennifer Chang\", role = \"rev\")\n)",
  "Description": "Implements a class and methods to work with sets, doing\nintersection, union, complementary sets, power sets, cartesian\nproduct and other set operations in a \"tidy\" way. These set\noperations are available for both classical sets and fuzzy\nsets. Import sets from several formats or from other several\ndata structures.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/ropensci/BaseSet,\nhttps://docs.ropensci.org/BaseSet/",
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  "Collate": "'validity.R' 'AllClasses.R' 'AllGenerics.R'\n'BaseSet-package.R' 'GMT.R' 'GeneSetCollection.R' 'activate.R'\n'add.R' 'add_column.R' 'add_relation.R' 'adjacency.R'\n'arrange.R' 'c.R' 'cardinality.R' 'cartesian.R' 'complement.R'\n'data_frame.R' 'deactivate.R' 'droplevels.R' 'elements.R'\n'extract.R' 'filter.R' 'group.R' 'group_by.R' 'head.R'\n'incidence.R' 'independent.R' 'operations.R' 'intersection.R'\n'length.R' 'list.R' 'move_to.R' 'mutate.R' 'names.R' 'naming.R'\n'nested.R' 'obo.R' 'power_set.R' 'print.R' 'pull.R'\n'relations.R' 'remove.R' 'remove_column.R' 'rename.R'\n'select.R' 'set.R' 'size.R' 'subtract.R' 'tidy-set.R' 'union.R'\n'union_closed.R' 'utils.R' 'zzz.R'",
  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2025-12-19 00:47:22 UTC",
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  "Author": "Lluís Revilla Sancho [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-9747-2570>),\nZebulun Arendsee [rev],\nJennifer Chang [rev]",
  "Maintainer": "Lluís Revilla Sancho <lluis.revilla@gmail.com>",
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    "add_elements",
    "add_relation",
    "add_relations",
    "add_sets",
    "adjacency_element",
    "adjacency_set",
    "arrange",
    "arrange_element",
    "arrange_relation",
    "arrange_set",
    "cardinality",
    "cartesian",
    "complement",
    "complement_element",
    "complement_set",
    "deactivate",
    "element_size",
    "elements",
    "elements<-",
    "filter",
    "filter_element",
    "filter_relation",
    "filter_set",
    "getGAF",
    "getGMT",
    "getOBO",
    "group",
    "group_by",
    "incidence",
    "independent",
    "independent_probabilities",
    "intersection",
    "is_nested",
    "is.fuzzy",
    "length_probability",
    "length_set",
    "move_to",
    "multiply_probabilities",
    "mutate",
    "mutate_element",
    "mutate_relation",
    "mutate_set",
    "name_elements",
    "name_elements<-",
    "name_sets",
    "name_sets<-",
    "naming",
    "nElements",
    "nRelations",
    "nSets",
    "power_set",
    "pull",
    "pull_element",
    "pull_relation",
    "pull_set",
    "relations",
    "relations<-",
    "remove_column",
    "remove_element",
    "remove_relation",
    "remove_set",
    "rename_elements",
    "rename_set",
    "replace_elements",
    "replace_relations",
    "replace_sets",
    "select",
    "select_element",
    "select_relation",
    "select_set",
    "set_size",
    "set_symbols",
    "sets",
    "sets<-",
    "show",
    "size",
    "subtract",
    "tidySet",
    "union",
    "union_closed",
    "union_probability"
  ],
  "_help": [
    {
      "page": "activate",
      "title": "Determine the context of subsequent manipulations.",
      "concept": [
        "methods"
      ],
      "topics": [
        "activate",
        "active",
        "deactivate"
      ]
    },
    {
      "page": "add_column",
      "title": "Add column",
      "concept": [
        "column",
        "methods"
      ],
      "topics": [
        "add_column",
        "add_column,TidySet,character-method"
      ]
    },
    {
      "page": "add_elements",
      "title": "Add elements to a TidySet",
      "concept": [
        "add_*"
      ],
      "topics": [
        "add_elements"
      ]
    },
    {
      "page": "add_relation",
      "title": "Add relations",
      "concept": [
        "add functions",
        "methods"
      ],
      "topics": [
        "add_relation",
        "add_relation,TidySet,data.frame-method"
      ]
    },
    {
      "page": "add_relations",
      "title": "Add relations to a TidySet",
      "concept": [
        "add_*"
      ],
      "topics": [
        "add_relations"
      ]
    },
    {
      "page": "add_sets",
      "title": "Add sets to a TidySet",
      "concept": [
        "add_*"
      ],
      "topics": [
        "add_sets"
      ]
    },
    {
      "page": "adjacency",
      "title": "Adjacency",
      "topics": [
        "adjacency",
        "adjacency.TidySet",
        "adjacency_element",
        "adjacency_set"
      ]
    },
    {
      "page": "arrange_",
      "title": "Arrange the order of a TidySet",
      "concept": [
        "methods"
      ],
      "topics": [
        "arrange.TidySet",
        "arrange_element",
        "arrange_relation",
        "arrange_set"
      ]
    },
    {
      "page": "as.data.frame.TidySet",
      "title": "Transforms a TidySet to a data.frame",
      "topics": [
        "as.data.frame.TidySet"
      ]
    },
    {
      "page": "as.list.TidySet",
      "title": "Convert to list",
      "topics": [
        "as.list.TidySet"
      ]
    },
    {
      "page": "c-TidySet-method",
      "title": "Combine Values into a Vector or List",
      "topics": [
        "c,TidySet-method"
      ]
    },
    {
      "page": "cardinality",
      "title": "Cardinality or membership of sets",
      "topics": [
        "cardinality",
        "cardinality,TidySet-method"
      ]
    },
    {
      "page": "cartesian",
      "title": "Create the cartesian product of two sets",
      "concept": [
        "methods"
      ],
      "topics": [
        "cartesian",
        "cartesian.TidySet"
      ]
    },
    {
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      "title": "Complement TidySet",
      "concept": [
        "complements",
        "methods"
      ],
      "topics": [
        "complement"
      ]
    },
    {
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      "title": "Complement of elements",
      "concept": [
        "complements",
        "methods",
        "methods that create new sets"
      ],
      "topics": [
        "complement_element",
        "complement_element,TidySet,characterORfactor-method"
      ]
    },
    {
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      "title": "Complement of a set",
      "concept": [
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        "methods",
        "methods that create new sets"
      ],
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        "complement_set,TidySet,characterORfactor-method"
      ]
    },
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      "title": "Dimnames of a TidySet",
      "topics": [
        "dimnames.TidySet"
      ]
    },
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      "page": "droplevels.TidySet",
      "title": "Drop unused elements and sets",
      "topics": [
        "droplevels.TidySet"
      ]
    },
    {
      "page": "element_size",
      "title": "Calculates the size of the elements",
      "concept": [
        "methods",
        "sizes"
      ],
      "topics": [
        "element_size",
        "element_size,TidySet-method"
      ]
    },
    {
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      "title": "Elements of the TidySet",
      "concept": [
        "methods",
        "slots"
      ],
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        "elements,TidySet-method",
        "elements<-",
        "elements<-,TidySet-method",
        "nElements,TidySet,logical-method",
        "nElements,TidySet,missing-method",
        "replace_elements"
      ]
    },
    {
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      "title": "Extract",
      "topics": [
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        "$<-,TidySet-method",
        "extract-TidySet",
        "[,TidySet-method",
        "[<-,TidySet-method",
        "[[,TidySet-method",
        "[[<-,TidySet-method"
      ]
    },
    {
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      "title": "Filter TidySet",
      "concept": [
        "methods"
      ],
      "topics": [
        "filter.TidySet",
        "filter_element",
        "filter_relation",
        "filter_set"
      ]
    },
    {
      "page": "getGAF",
      "title": "Read a GAF file",
      "concept": [
        "IO functions"
      ],
      "topics": [
        "getGAF"
      ]
    },
    {
      "page": "getGMT",
      "title": "Import GMT (Gene Matrix Transposed) files",
      "concept": [
        "IO functions"
      ],
      "topics": [
        "getGMT"
      ]
    },
    {
      "page": "getOBO",
      "title": "Read an OBO file",
      "concept": [
        "IO functions"
      ],
      "topics": [
        "getOBO"
      ]
    },
    {
      "page": "group",
      "title": "Create a new set from existing elements",
      "concept": [
        "methods"
      ],
      "topics": [
        "group",
        "group.TidySet"
      ]
    },
    {
      "page": "group_by_",
      "title": "group_by TidySet",
      "concept": [
        "methods"
      ],
      "topics": [
        "group_by.TidySet"
      ]
    },
    {
      "page": "incidence",
      "title": "Incidence",
      "concept": [
        "methods"
      ],
      "topics": [
        "incidence",
        "incidence,TidySet-method"
      ]
    },
    {
      "page": "independent",
      "title": "Independence of the sets",
      "topics": [
        "independent"
      ]
    },
    {
      "page": "intersection",
      "title": "Intersection of two or more sets",
      "concept": [
        "methods",
        "methods that create new sets"
      ],
      "topics": [
        "intersect",
        "intersection",
        "intersection,TidySet,character-method"
      ]
    },
    {
      "page": "is_nested",
      "title": "Are some sets as elements of other sets?",
      "concept": [
        "methods"
      ],
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        "is_nested",
        "is_nested.TidySet"
      ]
    },
    {
      "page": "is.fuzzy",
      "title": "Check if a TidySet is fuzzy.",
      "concept": [
        "methods"
      ],
      "topics": [
        "is.fuzzy",
        "is.fuzzy,TidySet-method"
      ]
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    {
      "page": "length_set",
      "title": "Calculates the probability",
      "topics": [
        "length_set"
      ]
    },
    {
      "page": "length.TidySet",
      "title": "Length of the TidySet",
      "topics": [
        "length.TidySet"
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    },
    {
      "page": "lengths-TidySet-method",
      "title": "Lengths of the TidySet",
      "topics": [
        "lengths,TidySet-method"
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      "title": "Move columns between slots",
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        "methods"
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        "move_to",
        "move_to,TidySet,characterORfactor,characterORfactor,character-method"
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        "multiply_probabilities"
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    },
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      "page": "mutate_",
      "title": "Mutate",
      "concept": [
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      "topics": [
        "mutate.TidySet",
        "mutate_element",
        "mutate_relation",
        "mutate_set"
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    },
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      "page": "name_elements",
      "title": "Name elements",
      "concept": [
        "names"
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      "topics": [
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        "name_elements,TidySet,logical-method",
        "name_elements,TidySet,missing-method",
        "name_elements<-,TidySet,logical,characterORfactor-method",
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      "concept": [
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        "names"
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        "name_elements<-"
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    },
    {
      "page": "name_sets",
      "title": "Name sets",
      "concept": [
        "methods",
        "names"
      ],
      "topics": [
        "name_sets",
        "name_sets,TidySet,logical-method",
        "name_sets,TidySet,missing-method",
        "name_sets<-,TidySet,logical,characterORfactor-method",
        "name_sets<-,TidySet,missing,characterORfactor-method"
      ]
    },
    {
      "page": "name_sets-set",
      "title": "Rename sets",
      "concept": [
        "methods",
        "names"
      ],
      "topics": [
        "name_sets<-"
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    },
    {
      "page": "names.TidySet",
      "title": "Names of a TidySet",
      "topics": [
        "names.TidySet"
      ]
    },
    {
      "page": "naming",
      "title": "Name an operation",
      "topics": [
        "naming"
      ]
    },
    {
      "page": "nElements",
      "title": "Number of elements",
      "concept": [
        "count functions",
        "methods"
      ],
      "topics": [
        "nElements"
      ]
    },
    {
      "page": "nRelations",
      "title": "Number of relations",
      "concept": [
        "count functions",
        "methods"
      ],
      "topics": [
        "nRelations"
      ]
    },
    {
      "page": "nSets",
      "title": "Number of sets",
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