{
  "_id": "6a90beaa81a7db60dfbf7e44",
  "Package": "DataSpaceR",
  "Type": "Package",
  "Title": "Interface to 'the CAVD DataSpace'",
  "Version": "1.0.2",
  "Authors@R": "c(person(\"Ju Yeong\", \"Kim\", role = \"aut\"),\nperson(\"Sean\", \"Hughes\", role = \"rev\"),\nperson(\"Jason\", \"Taylor\", email = \"jmtaylor@fredhutch.org\", role = c(\"aut\", \"cre\")),\nperson(\"Helen\", \"Miller\", role = \"aut\"),\nperson(\"Kellie\", \"MacPhee\", role = \"rev\"),\nperson(\"CAVD DataSpace\", email = \"dataspace.support@scharp.org\", role = \"cph\"))",
  "Description": "Provides a convenient API interface to access\nimmunological data within 'the CAVD\nDataSpace'(<https://dataspace.cavd.org>), a data sharing and\ndiscovery tool that facilitates exploration of HIV\nimmunological data from pre-clinical and clinical HIV vaccine\nstudies.",
  "URL": "https://docs.ropensci.org/DataSpaceR/,\nhttps://github.com/ropensci/DataSpaceR",
  "BugReports": "https://github.com/ropensci/DataSpaceR/issues",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2026-08-27 16:52:32 UTC",
  "RemoteUrl": "https://github.com/ropensci/DataSpaceR",
  "RemoteRef": "main",
  "RemoteSha": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-08-27 22:42:11 UTC",
    "User": "root"
  },
  "Author": "Ju Yeong Kim [aut],\nSean Hughes [rev],\nJason Taylor [aut, cre],\nHelen Miller [aut],\nKellie MacPhee [rev],\nCAVD DataSpace [cph]",
  "Maintainer": "Jason Taylor <jmtaylor@fredhutch.org>",
  "_user": "ropensci",
  "_type": "src",
  "_file": "DataSpaceR_1.0.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/2c68dfd2043071e5380737bb9b5f3f7bd645909501538c4d576a7b45d3bafbe0",
  "_filesize": 387820,
  "_sha256": "2c68dfd2043071e5380737bb9b5f3f7bd645909501538c4d576a7b45d3bafbe0",
  "_expires": "2026-12-05T22:48:08.000Z",
  "_created": "2026-08-27T22:42:11.000Z",
  "_published": "2026-08-27T22:48:10.051Z",
  "_jobs": [
    {
      "job": 98696175783,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "9667473382"
    },
    {
      "job": 98696175703,
      "time": 121,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "9667467791"
    },
    {
      "job": 98696175756,
      "time": 106,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "9667531654"
    },
    {
      "job": 98696175726,
      "time": 97,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "9667487992"
    },
    {
      "job": 98695489713,
      "time": 200,
      "config": "pkgdown",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "9667419420"
    },
    {
      "job": 98695489690,
      "time": 191,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "9667416299"
    },
    {
      "job": 98696175752,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "9667467083"
    },
    {
      "job": 98696175807,
      "time": 84,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "9667453561"
    },
    {
      "job": 98696175792,
      "time": 80,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "9667450549"
    },
    {
      "job": 98696175809,
      "time": 78,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "9667449658"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914",
  "_status": "success",
  "_upstream": "https://github.com/ropensci/DataSpaceR",
  "_commit": {
    "id": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
    "author": "Jason Taylor <42221209+jmtaylor-fhcrc@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Revision release for DataSpaceR - v1.0.2 (#53)\n\n* Update API call syntax and download warning for publications\n* Remove duplicate non-standard data, make one table across studies\n* Update tests, version, news",
    "time": 1787849552
  },
  "_maintainer": {
    "name": "Jason Taylor",
    "email": "jmtaylor@fredhutch.org",
    "login": "jmtaylor-fhcrc",
    "description": "",
    "uuid": 42221209
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3.0",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "R6",
      "role": "Imports"
    },
    {
      "package": "Rlabkey",
      "version": ">= 3.4.5",
      "role": "Imports"
    },
    {
      "package": "curl",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "assertthat",
      "role": "Imports"
    },
    {
      "package": "digest",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "ropensci",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-26",
      "n": 2
    },
    {
      "week": "2026-32",
      "n": 1
    },
    {
      "week": "2026-35",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v1.0.0",
      "date": "2026-06-26"
    },
    {
      "name": "v1.0.1",
      "date": "2026-08-05"
    },
    {
      "name": "v1.0.2",
      "date": "2026-08-27"
    }
  ],
  "_topics": [
    "cavd-dataspace"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "juyeongkim",
      "count": 267,
      "uuid": 5667572
    },
    {
      "user": "jmtaylor-fhcrc",
      "count": 52,
      "uuid": 42221209
    },
    {
      "user": "helenmiller16",
      "count": 9,
      "uuid": 29549419
    },
    {
      "user": "jeroen",
      "count": 1,
      "uuid": 216319
    },
    {
      "user": "maelle",
      "count": 1,
      "uuid": 8360597
    },
    {
      "user": "seaaan",
      "count": 1,
      "uuid": 10538357
    }
  ],
  "_userbio": {
    "uuid": 1200269,
    "type": "organization",
    "name": "rOpenSci",
    "followers": 1144,
    "description": "Tools and R Packages for Open Science"
  },
  "_downloads": {
    "count": 359,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DataSpaceR"
  },
  "_devurl": "https://github.com/ropensci/dataspacer",
  "_pkgdown": "https://docs.ropensci.org/DataSpaceR/",
  "_searchresults": 48,
  "_metadata": {
    "review": {
      "id": 261,
      "status": "reviewed",
      "version": "0.5.2",
      "organization": "rOpenSci Software Review",
      "url": "https://github.com/ropensci/software-review/issues/261"
    },
    "ropensci_category": "data-access"
  },
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DataSpaceR.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ropensci/dataspacer",
  "_realowner": "ropensci",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.6.3",
      "date": "2019-04-05"
    },
    {
      "version": "0.7.2",
      "date": "2019-08-22"
    },
    {
      "version": "0.7.3",
      "date": "2020-01-08"
    },
    {
      "version": "0.7.4",
      "date": "2020-08-26"
    },
    {
      "version": "0.7.5",
      "date": "2021-09-02"
    },
    {
      "version": "0.7.6",
      "date": "2022-06-24"
    },
    {
      "version": "0.7.7",
      "date": "2025-02-20"
    },
    {
      "version": "1.0.0",
      "date": "2026-06-26"
    },
    {
      "version": "1.0.1",
      "date": "2026-08-04"
    },
    {
      "version": "1.0.2",
      "date": "2026-08-27"
    }
  ],
  "_exports": [
    "checkNetrc",
    "connectDS",
    "getNetrcPath",
    "writeNetrc"
  ],
  "_help": [
    {
      "page": "DataSpaceR-package",
      "title": "DataSpaceR",
      "topics": [
        "DataSpaceR-package",
        "DataSpaceR"
      ]
    },
    {
      "page": "checkNetrc",
      "title": "Check netrc file",
      "topics": [
        "checkNetrc"
      ]
    },
    {
      "page": "connectDS",
      "title": "Create a connection to DataSpace",
      "topics": [
        "connectDS"
      ]
    },
    {
      "page": "DataSpaceConnection",
      "title": "The DataSpaceConnection class",
      "topics": [
        "DataSpaceConnection"
      ]
    },
    {
      "page": "DataSpaceDaash",
      "title": "The DataSpaceDAASH class",
      "topics": [
        "DataSpaceDaash"
      ]
    },
    {
      "page": "DataSpaceDonors",
      "title": "The DataSpaceDonors class",
      "topics": [
        "DataSpaceDonors"
      ]
    },
    {
      "page": "DataSpaceGroups",
      "title": "The DataSpaceGroups class",
      "topics": [
        "DataSpaceGroups"
      ]
    },
    {
      "page": "DataSpaceMabs",
      "title": "The DataSpaceMab class",
      "topics": [
        "DataSpaceMabs"
      ]
    },
    {
      "page": "DataSpaceStudies",
      "title": "The DataSpaceStudies class",
      "topics": [
        "DataSpaceStudies"
      ]
    },
    {
      "page": "getNetrcPath",
      "title": "Get a default netrc file path",
      "topics": [
        "getNetrcPath"
      ]
    },
    {
      "page": "writeNetrc",
      "title": "Write a netrc file",
      "topics": [
        "writeNetrc"
      ]
    }
  ],
  "_pkglogo": "https://github.com/ropensci/DataSpaceR/raw/main/man/figures/logo.png",
  "_readme": "https://github.com/ropensci/DataSpaceR/raw/main/README.md",
  "_rundeps": [
    "askpass",
    "assertthat",
    "bit",
    "bit64",
    "curl",
    "data.table",
    "digest",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "Rcpp",
    "Rlabkey",
    "sys"
  ],
  "_vignettes": [
    {
      "source": "DataSpace_DAASH.Rmd",
      "filename": "DataSpace_DAASH.html",
      "title": "Accessing DataSpace DAASH",
      "author": "Jason Taylor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Purpose",
        "Data Sources and Processing for DAASH",
        "Accessing DAASH via a DataSpaceConnection object",
        "Accessing DataSpace neutralizing antibody assay data from DAASH"
      ],
      "created": "2026-08-05 17:16:20",
      "modified": "2026-08-05 17:16:20",
      "commits": 1
    },
    {
      "source": "Monoconal_Antibody_Data.Rmd",
      "filename": "Monoconal_Antibody_Data.html",
      "title": "Accessing Monoclonal Antibody Data",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Workflow overview",
        "View metadata concerning the mAb object"
      ],
      "created": "2020-01-06 20:29:45",
      "modified": "2026-08-05 17:16:20",
      "commits": 10
    },
    {
      "source": "Publication_Data.Rmd",
      "filename": "Publication_Data.html",
      "title": "Accessing Publication Data",
      "author": "Helen Miller, Jason Taylor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Browsing publications in DataSpace",
        "Downloading Publication Data"
      ],
      "created": "2020-05-04 16:43:54",
      "modified": "2026-08-05 17:16:20",
      "commits": 14
    },
    {
      "source": "Studies_Groups.Rmd",
      "filename": "Studies_Groups.html",
      "title": "Accessing Studies and Groups",
      "author": "Ju Yeong Kim, Jason Taylor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Initiate a connection",
        "Loading Assay Datasets",
        "Connect to a saved group",
        "About DataSpaceR objects"
      ],
      "created": "2026-08-05 17:16:20",
      "modified": "2026-08-05 17:16:20",
      "commits": 1
    },
    {
      "source": "DataSpaceR.Rmd",
      "filename": "DataSpaceR.html",
      "title": "Introduction to DataSpaceR",
      "author": "Ju Yeong Kim, Jason Taylor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Update note from version 0.X to version 1.X",
        "Configuration",
        "Creating a netrc file with writeNetrc",
        "Manually creating a netrc file",
        "Accessing Studies and Groups",
        "Accessing MAb and MAb Donor Data",
        "Accessing DataSpace DAASH",
        "Accessing Publication Data",
        "Accessing Virus Metadata",
        "Accessing Help Files"
      ],
      "created": "2019-12-20 18:35:48",
      "modified": "2026-08-05 17:16:20",
      "commits": 13
    },
    {
      "source": "Virus_Name_Mapping_Tables.Rmd",
      "filename": "Virus_Name_Mapping_Tables.html",
      "title": "Using The Virus Name Mapping Tables",
      "author": "Jason Taylor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Purpose",
        "Our sources",
        "Usage caveats",
        "Tutorial for using mapping tables",
        "Checking the dataset for a virus name synonym",
        "Getting standard names from virus_metadata_all",
        "Additional notes for users processing data from the CAVIMC Neutralizing Antibody Cores",
        "Check the harvest date",
        "Check with the lab"
      ],
      "created": "2022-06-21 22:37:19",
      "modified": "2026-08-05 17:16:20",
      "commits": 3
    }
  ],
  "_score": 7.033423755486949,
  "_indexed": true,
  "_nocasepkg": "dataspacer",
  "_universes": [
    "ropensci",
    "jmtaylor-fhcrc"
  ],
  "_previous": "1.0.1",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-08-27T22:44:30.000Z",
      "distro": "resolute",
      "commit": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
      "fileid": "https://r2.ropensci.org/ea432957132a782ad43da4b8169ac40a819d4f40cba0e399cd4f616d78a36300",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-08-27T22:44:17.000Z",
      "distro": "resolute",
      "commit": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
      "fileid": "https://r2.ropensci.org/253199a33e24dc51b8ccabb068f45d5e465ac54949b8af3e5a1c3d9e8e109d84",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-08-27T22:46:45.000Z",
      "commit": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
      "fileid": "https://r2.ropensci.org/19c7d5332dfca165443937a81ba25bd9a11acb00d4755bc4c8f10bd8693507ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-08-27T22:45:02.000Z",
      "commit": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
      "fileid": "https://r2.ropensci.org/8476a7dc1ad9cf6ddcee95f4c302823a254352bb26946a1ed6753d5e2467fa68",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-08-27T22:44:29.000Z",
      "commit": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
      "fileid": "https://r2.ropensci.org/c73c21fa5b1bff29dc9466e059efd9d46a62ea7f744ba347808444df01831bf6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-08-27T22:43:32.000Z",
      "commit": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
      "fileid": "https://r2.ropensci.org/b0c2970ea0f1c4ead0c1c241f5a19058f7bc9f8ceae1e95e927d53f2d2fda327",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-08-27T22:43:21.000Z",
      "commit": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
      "fileid": "https://r2.ropensci.org/060760df1fddc3b847b1aa49552ab852f085542e1b01f59e9e672b7ab64fb34a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-08-27T22:43:24.000Z",
      "commit": "908f6f0aaff979a9a35d6ca803ce88245ca9790a",
      "fileid": "https://r2.ropensci.org/c30ec8b0a74791ccc35d8f74c06b739b517cb659cf7bdf62395b7cff16205fef",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/33123329914"
    }
  ]
}