{ "_id": "69df41d5c5259ad4cd8dca75", "Package": "SymbiotaR2", "Type": "Package", "Title": "Downloading Data from Symbiota2 Portals into R", "Version": "0.0-1", "Authors@R": "c(person(\"Austin\", \"Koontz\", email = \"austinkoontz11@gmail.com\", role = c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-6103-5896\")),\nperson(\"William D.\", \"Pearse\", email = \"will.pearse@gmail.com\", role =\"aut\", comment=c(ORCID=\"0000-0002-6241-3164\")),\nperson(\"Ben\", \"Bond-Lamberty\", role = \"rev\", comment = \"Ben reviewed SymbiotaR2 for rOpenSci and provided valuable feedback, see https://github.com/ropensci/software-review/issues/373\"),\nperson(\"Scott\", \"Chamberlain\", role = \"rev\", comment = \"Scott reviewed SymbiotaR2 for rOpenSci and provided valuable feedback, see https://github.com/ropensci/software-review/issues/373\"))", "Maintainer": "Austin Koontz ", "Description": "Download data from Symbiota2 portals using Symbiota's API.\nCovers the Checklists, Collections, Crowdsource, Exsiccati,\nGlossary, ImageProcessor, Key, Media, Occurrence, Reference,\nTaxa, Traits, and UserRoles API families. Each Symbiota2 portal\nowner can load their own plugins (and modified code), and so\nthis package may not cover every possible API endpoint from a\ngiven Symbiota2 instance.", "License": "MIT + file LICENSE", "URL": "https://github.com/pearselab/SymbiotaR2", "BugReports": "https://github.com/pearselab/SymbiotaR2/issues", "VignetteBuilder": "knitr", "LazyLoad": "yes", "Encoding": "UTF-8", "RoxygenNote": "7.1.0", "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev", "Repository": "https://ropensci.r-universe.dev", "Date/Publication": "2022-01-26 22:26:15 UTC", "RemoteUrl": "https://github.com/ropensci/SymbiotaR2", "RemoteRef": "master", "RemoteSha": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "NeedsCompilation": "no", "Packaged": { "Date": "2026-04-15 07:41:28 UTC", "User": "root" }, "Author": "Austin Koontz [aut, cre] (ORCID:\n),\nWilliam D. Pearse [aut] (ORCID:\n),\nBen Bond-Lamberty [rev] (Ben reviewed SymbiotaR2 for rOpenSci and\nprovided valuable feedback, see\nhttps://github.com/ropensci/software-review/issues/373),\nScott Chamberlain [rev] (Scott reviewed SymbiotaR2 for rOpenSci and\nprovided valuable feedback, see\nhttps://github.com/ropensci/software-review/issues/373)", "MD5sum": "9671a0d232cbd727ca118651dcf91f31", "_user": "ropensci", "_type": "src", "_file": "SymbiotaR2_0.0-1.tar.gz", "_fileid": "cc1c1a7ad2f847a0ddff74b3c91efc62e783e59aa3324c37946e43a7b7b3d750", "_filesize": 276376, "_sha256": "cc1c1a7ad2f847a0ddff74b3c91efc62e783e59aa3324c37946e43a7b7b3d750", "_created": "2026-04-15T07:41:28.000Z", "_published": "2026-04-15T07:44:21.706Z", "_distro": "noble", "_jobs": [ { "job": 71410755940, "time": 127, "config": "linux-devel-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "6445410217" }, { "job": 71410755922, "time": 128, "config": "linux-release-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "6445410591" }, { "job": 71410755953, "time": 88, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "6445399582" }, { "job": 71410755936, "time": 93, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "6445401119" }, { "job": 71410316391, "time": 190, "config": "pkgdown", "r": "4.5.2", "check": "OK", "artifact": "6445371629" }, { "job": 71410316382, "time": 200, "config": "source", "r": "4.5.3", "check": "OK", "artifact": "6445374122" }, { "job": 71410755890, "time": 93, "config": "wasm-release", "r": "4.5.1", "check": "OK", "artifact": "6445401022" }, { "job": 71410755960, "time": 84, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "6445398706" }, { "job": 71410755949, "time": 104, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "6445403941" }, { "job": 71410755947, "time": 72, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "6445395424" } ], "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/24442385571", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ropensci/SymbiotaR2", "_commit": { "id": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "author": "Austin Koontz ", "committer": "GitHub ", "message": "Merge pull request #10 from ropensci/maelle-patch-1\n\nFix NEWS formatting for pkgdown", "time": 1643235975 }, "_maintainer": { "name": "Austin Koontz", "email": "austinkoontz11@gmail.com", "login": "akoontz11", "mastodon": "@akoontz11@ecoevo.social", "bluesky": "@akoontz11.bsky.social", "orcid": "0000-0002-6103-5896", "uuid": 42682980 }, "_registered": true, "_dependencies": [ { "package": "httr", "version": ">= 1.0.0", "role": "Imports" }, { "package": "rjson", "version": ">= 0.2.20", "role": "Imports" }, { "package": "fs", "version": ">= 1.2.6", "role": "Imports" }, { "package": "curl", "version": ">= 3.3", "role": "Imports" }, { "package": "knitr", "version": ">= 1.23", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.0.0", "role": "Suggests" }, { "package": "vcr", "role": "Suggests" } ], "_owner": "ropensci", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "database", "library", "specimen-records", "symbiota", "symbiota2", "symbiota2-portal" ], "_stars": 2, "_contributors": [ { "user": "akoontz11", "count": 214, "uuid": 42682980 }, { "user": "willpearse", "count": 18, "uuid": 1236050 }, { "user": "maelle", "count": 1, "uuid": 8360597 } ], "_userbio": { "uuid": 1200269, "type": "organization", "name": "rOpenSci", "description": "Tools and R Packages for Open Science" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SymbiotaR2" }, "_devurl": "https://github.com/pearselab/symbiotar2", "_searchresults": 7, "_metadata": { "review": { "id": 373, "status": "reviewed", "version": "0.0-1", "organization": "rOpenSci Software Review", "url": "https://github.com/ropensci/software-review/issues/373" }, "ropensci_category": "SymbiotaR2" }, "_rbuild": "4.5.3", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SymbiotaR2.html", "manual.pdf" ], "_realowner": "ropensci", "_cranurl": false, "_exports": [ "AccessStats", "Associations", "Authorities", "Categories", "Central", "CharacterHeading", "Characters", "CharacterStateImages", "CharacterStates", "ChecklistProjects", "Checklists", "Collections", "Comments", "Configurations", "Coordinates", "DatasetLink", "Datasets", "DescriptionBlock", "DescriptionDeletions", "Determinations", "Duplicates", "EditLocks", "Edits", "Exchange", "FullText", "Glossary", "GuidDeterminations", "GuidOccurrences", "Institutions", "Loans", "LookupChronostratigraphy", "LookupCounties", "LookupCountries", "LookupLanguages", "LookupReferenceTypes", "LookupStateProvinces", "Numbers", "Occurrences", "Projects", "Queue", "RawLabels", "SchemaVersion", "Stats", "SymbiotaR2_setup", "Synonymy", "TagKey", "Taxa", "TaxaLink", "TermLink", "Titles", "Traits", "UploadMappings", "UploadParameters", "Verification" ], "_help": [ { "page": "Checklists", "title": "Retrieves Checklists resources from the Symbiota2 server", "topics": [ "ChecklistProjects", "Checklists", "Coordinates", "TaxaLink" ] }, { "page": "Collection", "title": "Retrieves Collection resources from the Symbiota2 server", "topics": [ "Categories", "Collection", "Collections", "Institutions", "Stats" ] }, { "page": "Crowdsource", "title": "Retrieves Crowdsource resources from the Symbiota2 server", "topics": [ "Central", "Crowdsource", "Queue" ] }, { "page": "Exsiccati", "title": "Retrieves Exsiccati resources from the Symbiota2 server", "topics": [ "Exsiccati", "Numbers", "Titles" ] }, { "page": "Glossary", "title": "Retrieves Glossary resources from the Symbiota2 server", "topics": [ "Glossary", "TermLink" ] }, { "page": "ImagePRocessor", "title": "Retrieves ImageProcessor resources from the Symbiota2 server", "topics": [ "ImagePRocessor", "Projects", "RawLabels" ] }, { "page": "Key", "title": "Retrieves Key resources from the Symbiota2 server", "topics": [ "CharacterHeading", "Characters", "CharacterStateImages", "CharacterStates", "DescriptionDeletions", "Key" ] }, { "page": "Media", "title": "Retrieves Media resources from the Symbiota2 server", "topics": [ "Media", "TagKey" ] }, { "page": "Miscellaneous", "title": "Retrieves Miscellaneous resources from the Symbiota2 server", "topics": [ "Configurations", "LookupLanguages", "Miscellaneous", "SchemaVersion" ] }, { "page": "Occurrences", "title": "Retrieves Occurrence resources from the Symbiota2 server", "topics": [ "AccessStats", "Associations", "Comments", "DatasetLink", "Datasets", "Determinations", "Duplicates", "EditLocks", "Edits", "Exchange", "FullText", "GuidDeterminations", "GuidOccurrences", "Loans", "LookupChronostratigraphy", "LookupCounties", "LookupCountries", "LookupStateProvinces", "Occurrences", "UploadMappings", "UploadParameters", "Verification" ] }, { "page": "Reference", "title": "Retrieves Reference resources from the Symbiota2 server", "topics": [ "LookupReferenceTypes", "Reference" ] }, { "page": "SymbiotaR2", "title": "Downloading data from Symbiota2 portals into R", "topics": [ "SymbiotaR2-package", "package-SymbiotaR2", "SymbiotaR2" ] }, { "page": "SymbiotaR2_setup", "title": "Set default URL for Symbiota2 portal download", "topics": [ "SymbiotaR2_setup" ] }, { "page": "Taxa", "title": "Retrieves Taxa resources from the Symbiota2 server", "topics": [ "Authorities", "DescriptionBlock", "Synonymy", "Taxa" ] }, { "page": "Traits", "title": "Retrieves Traits resources from the Symbiota2 server", "topics": [ "Traits" ] } ], "_readme": "https://github.com/ropensci/SymbiotaR2/raw/master/README.md", "_rundeps": [ "askpass", "curl", "fs", "httr", "jsonlite", "mime", "openssl", "R6", "rjson", "sys" ], "_vignettes": [ { "source": "SymbiotaR2-intro.Rmd", "filename": "SymbiotaR2-intro.html", "title": "Downloading data from Symbiota2 portals in R", "author": "Austin Koontz & William D. Pearse", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Workflow", "Installation", "Portal Specification", "Example", "Troubleshooting", "(For developers) Unit tests" ], "created": "2019-11-27 21:19:57", "modified": "2020-10-08 17:35:34", "commits": 11 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "symbiotar2", "_universes": [ "ropensci", "akoontz11", "pearselab" ], "_binaries": [ { "r": "4.6.0", "os": "linux", "version": "0.0-1", "date": "2026-04-15T07:43:36.000Z", "distro": "noble", "commit": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "fileid": "76c1932bc4427403d5d0414479cd4330cdd14c0abf8b4d528f0d9b7e87676bcd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24442385571" }, { "r": "4.5.3", "os": "mac", "version": "0.0-1", "date": "2026-04-15T07:43:04.000Z", "commit": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "fileid": "75a1e99082594be7c90c12d56a34182f65642328d2040762dbfbed161078decd", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24442385571" }, { "r": "4.6.0", "os": "mac", "version": "0.0-1", "date": "2026-04-15T07:43:08.000Z", "commit": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "fileid": "5be5395fb62c9375d401e2b1c3e5d2429ec67be3b80fe95d99a6ccfda0109d0d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24442385571" }, { "r": "4.5.1", "os": "wasm", "version": "0.0-1", "date": "2026-04-15T07:43:22.000Z", "commit": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "fileid": "b84d2f3a387681053816770553b95e450620eedc7b5fe52acafa327c56966090", "status": "success", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24442385571" }, { "r": "4.7.0", "os": "win", "version": "0.0-1", "date": "2026-04-15T07:42:45.000Z", "commit": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "fileid": "37127d47cb892ddc20a868a0a5df538ae21a5ca22c9bd51d42ae69752eb14431", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24442385571" }, { "r": "4.5.3", "os": "win", "version": "0.0-1", "date": "2026-04-15T07:43:06.000Z", "commit": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "fileid": "3066bd2eb57d6a4bbbe842173a38b61d9069aa6c1507ed4b9f0ba8e6b2312933", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24442385571" }, { "r": "4.6.0", "os": "win", "version": "0.0-1", "date": "2026-04-15T07:42:36.000Z", "commit": "f0231b51066d15e7d6a64baf5c63eb37236a23bd", "fileid": "99194c8da982318ffaf9fd959e887083015cdb9657165cb2f9c87bbabc7643d1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24442385571" } ] }