{
  "_id": "6a6c380f3388593b7e8cc7e3",
  "Package": "helminthR",
  "Type": "Package",
  "Title": "Access London Natural History Museum Host-Helminth Record\nDatabase",
  "Version": "1.1.0",
  "Authors@R": "person(\"Tad Dallas\", role = c(\"aut\",\"cre\"), email = \"tad.a.dallas@gmail.com\")",
  "VignetteBuilder": "knitr",
  "URL": "https://docs.ropensci.org/helminthR/,\nhttps://github.com/rOpenSci/helminthR/",
  "BugReports": "https://github.com/rOpenSci/helminthR/issues/",
  "Description": "Access to large host-parasite data is often hampered by\nthe availability of data and difficulty in obtaining it in a\nprogrammatic way to encourage analyses. 'helminthR' provides\naccesss to the London Natural History Museum's host-parasite\ndatabase, one of the largest host-parasite databases existing\ncurrently.",
  "License": "GPL-3",
  "LazyData": "yes",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev libssl-dev",
  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2025-09-04 14:13:45 UTC",
  "RemoteUrl": "https://github.com/ropensci/helminthR",
  "RemoteRef": "master",
  "RemoteSha": "02afebbb662009790a60d6df43df201b5ac0d739",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-31 05:37:34 UTC",
    "User": "root"
  },
  "Author": "Tad Dallas [aut, cre]",
  "Maintainer": "Tad Dallas <tad.a.dallas@gmail.com>",
  "_user": "ropensci",
  "_type": "src",
  "_file": "helminthR_1.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/367d004a06b2a9c4277237262ebb719f2f6e0d64df1696bdaee52f23d70d89d2",
  "_filesize": 9775858,
  "_sha256": "367d004a06b2a9c4277237262ebb719f2f6e0d64df1696bdaee52f23d70d89d2",
  "_expires": "2026-11-08T05:52:12.000Z",
  "_created": "2026-07-31T05:37:34.000Z",
  "_published": "2026-07-31T05:52:14.967Z",
  "_jobs": [
    {
      "job": 91082268275,
      "time": 143,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8784114207"
    },
    {
      "job": 91082268297,
      "time": 137,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8784112342"
    },
    {
      "job": 91082268319,
      "time": 81,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8784297982"
    },
    {
      "job": 91082268309,
      "time": 100,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8784308274"
    },
    {
      "job": 91081643971,
      "time": 137,
      "config": "pkgdown",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8784040934"
    },
    {
      "job": 91081643963,
      "time": 259,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8784074447"
    },
    {
      "job": 91082268278,
      "time": 136,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8784114397"
    },
    {
      "job": 91082268294,
      "time": 108,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8784104888"
    },
    {
      "job": 91082268324,
      "time": 64,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8784096815"
    },
    {
      "job": 91082268342,
      "time": 74,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8784094810"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011",
  "_status": "success",
  "_upstream": "https://github.com/ropensci/helminthR",
  "_commit": {
    "id": "02afebbb662009790a60d6df43df201b5ac0d739",
    "author": "taddallas <tad.a.dallas@gmail.com>",
    "committer": "taddallas <tad.a.dallas@gmail.com>",
    "message": "updated loadData to work\n",
    "time": 1756995225
  },
  "_maintainer": {
    "name": "Tad Dallas",
    "email": "tad.a.dallas@gmail.com",
    "login": "taddallas",
    "twitter": "@taddallas",
    "description": "",
    "uuid": 5226753
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "taxize",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "ropensci",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-36",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "disease-networks",
    "helminth",
    "open-data",
    "parasites"
  ],
  "_stars": 10,
  "_contributors": [
    {
      "user": "taddallas",
      "count": 12,
      "uuid": 5226753
    },
    {
      "user": "karthik",
      "count": 4,
      "uuid": 138494
    },
    {
      "user": "hadley",
      "count": 1,
      "uuid": 4196
    },
    {
      "user": "maelle",
      "count": 1,
      "uuid": 8360597
    },
    {
      "user": "sckott",
      "count": 1,
      "uuid": 577668
    },
    {
      "user": "stevenysw",
      "count": 1,
      "uuid": 14078330
    }
  ],
  "_userbio": {
    "uuid": 1200269,
    "type": "organization",
    "name": "rOpenSci",
    "followers": 1133,
    "description": "Tools and R Packages for Open Science"
  },
  "_downloads": {
    "count": 29,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/helminthR"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/ropensci/helminthr",
  "_pkgdown": "https://docs.ropensci.org/helminthR/",
  "_searchresults": 15,
  "_metadata": {
    "ropensci_category": "data-access"
  },
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/helminthR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "ropensci",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.5",
      "date": "2018-07-30"
    },
    {
      "version": "1.0.6",
      "date": "2018-08-15"
    },
    {
      "version": "1.0.7",
      "date": "2019-02-03"
    },
    {
      "version": "1.0.8",
      "date": "2021-02-16"
    },
    {
      "version": "1.0.9",
      "date": "2021-08-16"
    },
    {
      "version": "1.0.10",
      "date": "2022-12-09"
    }
  ],
  "_exports": [
    "cleanData",
    "loadData"
  ],
  "_datasets": [
    {
      "name": "locations",
      "title": "Table of geographic location names, and associated coordinates",
      "object": "locations",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Location",
        "Latitude",
        "Longitude"
      ],
      "rows": 498,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "helminthR-package",
      "title": "Access London Natural History Museum host-helminth record database",
      "topics": [
        "helminthR-package",
        "helminthR"
      ]
    },
    {
      "page": "cleanData",
      "title": "Clean helminth parasite occurrence data",
      "topics": [
        "cleanData"
      ]
    },
    {
      "page": "loadData",
      "title": "Load the helminth interaction data",
      "topics": [
        "loadData"
      ]
    },
    {
      "page": "locations",
      "title": "Table of geographic location names, and associated coordinates",
      "topics": [
        "locations"
      ]
    }
  ],
  "_readme": "https://github.com/ropensci/helminthR/raw/master/README.md",
  "_rundeps": [
    "ape",
    "askpass",
    "cli",
    "cpp11",
    "crayon",
    "crul",
    "curl",
    "data.table",
    "digest",
    "dplyr",
    "fastmatch",
    "generics",
    "glue",
    "hms",
    "httpcode",
    "httr",
    "igraph",
    "jsonlite",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "mime",
    "natserv",
    "nlme",
    "openssl",
    "phangorn",
    "pillar",
    "pkgconfig",
    "plyr",
    "prettyunits",
    "progress",
    "quadprog",
    "R6",
    "Rcpp",
    "rentrez",
    "ritis",
    "rlang",
    "rncl",
    "rotl",
    "rredlist",
    "solrium",
    "stringi",
    "sys",
    "taxize",
    "tibble",
    "tidyselect",
    "triebeard",
    "urltools",
    "utf8",
    "vctrs",
    "WikipediR",
    "wikitaxa",
    "withr",
    "worrms",
    "XML",
    "xml2",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "helminthR_vignette.Rmd",
      "filename": "helminthR_vignette.html",
      "title": "Introduction to the helminthR package",
      "author": "Tad Dallas",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Package functionality",
        "loadData()",
        "cleanData()",
        "data(locations)",
        "plotting host-helminth networks"
      ],
      "created": "2017-10-08 01:04:47",
      "modified": "2025-06-24 19:58:10",
      "commits": 7
    }
  ],
  "_score": 4.574031267727719,
  "_indexed": true,
  "_nocasepkg": "helminthr",
  "_universes": [
    "ropensci",
    "taddallas"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-31T05:40:01.000Z",
      "distro": "resolute",
      "commit": "02afebbb662009790a60d6df43df201b5ac0d739",
      "fileid": "https://r2.ropensci.org/8db6e1069414349d58c9442a602f4994b50921cac02b2a225778b2003eaddce9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-31T05:39:56.000Z",
      "distro": "resolute",
      "commit": "02afebbb662009790a60d6df43df201b5ac0d739",
      "fileid": "https://r2.ropensci.org/4ba5a14b7fa2e4ac1b616e0f829cd93627c4dedf0708adcf434d30f767e3c67c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-07-31T05:50:59.000Z",
      "commit": "02afebbb662009790a60d6df43df201b5ac0d739",
      "fileid": "https://r2.ropensci.org/791526266f6204a0c102de290ffe9998db722b34c998c158fa146291e9630211",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-07-31T05:51:32.000Z",
      "commit": "02afebbb662009790a60d6df43df201b5ac0d739",
      "fileid": "https://r2.ropensci.org/2c239e9d154af980d0cd60dbbf85b0ba11b1d76746389c1d2004ed94db6d5add",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.0",
      "date": "2026-07-31T05:40:12.000Z",
      "commit": "02afebbb662009790a60d6df43df201b5ac0d739",
      "fileid": "https://r2.ropensci.org/39529de6a21a590a361343b1508572927d863c16e5ad00467b33b9d767668195",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-31T05:39:11.000Z",
      "commit": "02afebbb662009790a60d6df43df201b5ac0d739",
      "fileid": "https://r2.ropensci.org/605551d0f6dac2992366643d4d575e97b29fd6b0ab421412e2093887364c1c0d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-31T05:38:56.000Z",
      "commit": "02afebbb662009790a60d6df43df201b5ac0d739",
      "fileid": "https://r2.ropensci.org/2e0b4bc269dfeb4a8f9770da4f9c31e68e55890775a0ca60e1fad97751d4b400",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-31T05:38:45.000Z",
      "commit": "02afebbb662009790a60d6df43df201b5ac0d739",
      "fileid": "https://r2.ropensci.org/9cfc8eab48954f65c31b551959cd11b230e660e6d5064169c92d1429dcb1c09f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/30607077011"
    }
  ]
}