{ "_id": "697b67a3e1e1115ed0b8e579", "Package": "mauricer", "Type": "Package", "Title": "Work with 'BEAST2' Packages", "Version": "2.5.5", "Authors@R": "c(\nperson(\"Richèl J.C.\", \"Bilderbeek\", email = \"rjcbilderbeek@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-1107-7049\")),\nperson(\"Olivier\", \"Roy\", role = \"ctb\"))", "Maintainer": "Richèl J.C. Bilderbeek ", "Description": "'BEAST2' () is a widely used\nBayesian phylogenetic tool, that uses DNA/RNA/protein data and\nmany model priors to create a posterior of jointly estimated\nphylogenies and parameters. 'BEAST2' is commonly accompanied by\n'BEAUti 2' (), which, among others,\nallows one to install 'BEAST2' package. This package allows to\nwork with 'BEAST2' packages from 'R'.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "URL": "https://docs.ropensci.org/mauricer/ (website)\nhttps://github.com/ropensci/mauricer", "BugReports": "https://github.com/ropensci/mauricer/issues", "SystemRequirements": "BEAST2 (https://www.beast2.org/)", "Config/pak/sysreqs": "libglpk-dev make default-jdk libicu-dev libxml2-dev\nlibx11-dev zlib1g-dev", "Repository": "https://ropensci.r-universe.dev", "Date/Publication": "2025-12-17 07:40:49 UTC", "RemoteUrl": "https://github.com/ropensci/mauricer", "RemoteRef": "main", "RemoteSha": "e6dffca22b578977c1be138b4b389d64e872d36b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-01-24 07:58:26 UTC", "User": "root" }, "Author": "Richèl J.C. Bilderbeek [aut, cre] (ORCID:\n),\nOlivier Roy [ctb]", "MD5sum": "75ff8bdde3a2ffb77d48db9b7d400530", "_user": "ropensci", "_type": "src", "_file": "mauricer_2.5.5.tar.gz", "_fileid": "c04f37a40a09fad5fb900880170bb935bec0b9d0505100cb35eccb565e485fb0", "_filesize": 167719, "_sha256": "c04f37a40a09fad5fb900880170bb935bec0b9d0505100cb35eccb565e485fb0", "_created": "2026-01-24T07:58:26.000Z", "_published": "2026-01-29T13:58:59.317Z", "_distro": "noble", "_jobs": [ { "job": 61876750085, "time": 152, "config": "linux-devel-x86_64", "r": "4.6.0", "check": "OK", "artifact": "5242973525" }, { "job": 61876749976, "time": 143, "config": "linux-release-x86_64", "r": "4.5.2", "check": "OK", "artifact": "5242973184" }, { "job": 61876750300, "time": 111, "config": "macos-devel-arm64", "r": "4.6.0", "check": "OK", "artifact": "5242971719" }, { "job": 61876750112, "time": 79, "config": "macos-release-arm64", "r": "4.5.2", "check": "OK", "artifact": "5242970174" }, { "job": 61876749425, "time": 158, "config": "pkgdown", "r": "4.5.2", "check": "OK", "artifact": "5304218555" }, { "job": 61876749875, "time": 195, "config": "source", "r": "4.5.2", "check": "OK", "artifact": "5242966730" }, { "job": 61876750066, "time": 130, "config": "wasm-release", "r": "4.5.1", "check": "OK", "artifact": "5242972466" }, { "job": 61876750047, "time": 96, "config": "windows-devel", "r": "4.6.0", "check": "OK", "artifact": "5242970917" }, { "job": 61876750245, "time": 92, "config": "windows-oldrel", "r": "4.4.3", "check": "OK", "artifact": "5242970778" }, { "job": 61876750020, "time": 77, "config": "windows-release", "r": "4.5.2", "check": "OK", "artifact": "5242970085" } ], "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ropensci/mauricer", "_commit": { "id": "e6dffca22b578977c1be138b4b389d64e872d36b", "author": "richelbilderbeek ", "committer": "richelbilderbeek ", "message": "Fix Markdown\n", "time": 1765957249 }, "_maintainer": { "name": "Richèl J.C. Bilderbeek", "email": "rjcbilderbeek@gmail.com", "login": "richelbilderbeek", "orcid": "0000-0003-1107-7049", "uuid": 2098230 }, "_registered": true, "_dependencies": [ { "package": "stringr", "role": "Imports" }, { "package": "beastier", "version": ">= 2.5", "role": "Imports" }, { "package": "beautier", "version": ">= 2.6.11", "role": "Suggests" }, { "package": "curl", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.1.0", "role": "Suggests" }, { "package": "tracerer", "role": "Suggests" } ], "_owner": "ropensci", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-35", "n": 2 }, { "week": "2025-44", "n": 1 }, { "week": "2025-51", "n": 2 } ], "_tags": [], "_stars": 3, "_contributors": [ { "user": "richelbilderbeek", "count": 19, "uuid": 2098230 }, { "user": "olivroy", "count": 3, "uuid": 52606734 } ], "_userbio": { "uuid": 1200269, "type": "organization", "name": "rOpenSci", "description": "Tools and R Packages for Open Science" }, "_downloads": { "count": 614, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mauricer" }, "_devurl": "https://github.com/ropensci/mauricer", "_pkgdown": "https://docs.ropensci.org/mauricer/", "_searchresults": 11, "_topics": [ "openjdk" ], "_metadata": { "ropensci_category": "scalereprod" }, "_rbuild": "4.5.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mauricer.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ropensci/mauricer", "_realowner": "ropensci", "_cranurl": true, "_releases": [ { "version": "2.0.3", "date": "2019-11-15" }, { "version": "2.0.5", "date": "2019-12-02" }, { "version": "2.1", "date": "2020-08-10" }, { "version": "2.3", "date": "2020-10-31" }, { "version": "2.5.1", "date": "2021-09-08" }, { "version": "2.5.2", "date": "2022-08-12" }, { "version": "2.5.4", "date": "2024-06-11" } ], "_exports": [ "get_beast2_pkg_names", "get_mrc_path", "get_mrc_paths", "install_beast2_pkg", "is_beast2_ns_pkg_installed", "is_beast2_pkg_installed", "uninstall_beast2_pkg" ], "_help": [ { "page": "default_params_doc", "title": "This function does nothing. It is intended to inherit is parameters' documentation.", "topics": [ "default_params_doc" ] }, { "page": "get_beast2_pkg_names", "title": "Get all BEAST2 package names", "topics": [ "get_beast2_pkg_names" ] }, { "page": "get_mrc_path", "title": "Get the full path of a 'mauricer' file", "topics": [ "get_mrc_path" ] }, { "page": "get_mrc_paths", "title": "Get the full path of one or more 'mauricer' files", "topics": [ "get_mrc_paths" ] }, { "page": "install_beast2_pkg", "title": "Install a BEAST2 package", "topics": [ "install_beast2_pkg" ] }, { "page": "is_beast2_ns_pkg_installed", "title": "Is the BEAST2 NS package installed?", "topics": [ "is_beast2_ns_pkg_installed" ] }, { "page": "is_beast2_pkg_installed", "title": "Is a BEAST2 package installed?", "topics": [ "is_beast2_pkg_installed" ] }, { "page": "uninstall_beast2_pkg", "title": "Uninstall a BEAST2 package", "topics": [ "uninstall_beast2_pkg" ] } ], "_readme": "https://github.com/ropensci/mauricer/raw/main/README.md", "_rundeps": [ "ade4", "ape", "beastier", "beautier", "bit", "bit64", "cli", "clipr", "cpp11", "crayon", "digest", "fastmatch", "generics", "glue", "hms", "igraph", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "nlme", "phangorn", "pillar", "pixmap", "pkgconfig", "prettyunits", "progress", "purrr", "quadprog", "R6", "rappdirs", "Rcpp", "RcppArmadillo", "readr", "rJava", "rlang", "segmented", "seqinr", "sessioninfo", "sp", "stringi", "stringr", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "vroom", "withr", "xml2" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-21-jre-headless", "headers": "openjdk-21-jre-headless", "source": "openjdk", "version": "21.0.9+10-1~24.04", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_vignettes": [ { "source": "demo.Rmd", "filename": "demo.html", "title": "mauricer demo", "author": "Richèl J.C. Bilderbeek", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "List all BEAST2 packages", "Install the first non-installed BEAST2 package", "Uninstall the BEAST2 package" ], "created": "2018-09-11 08:46:28", "modified": "2021-05-22 10:28:03", "commits": 17 } ], "_score": 5.472756449317212, "_indexed": true, "_nocasepkg": "mauricer", "_universes": [ "ropensci", "richelbilderbeek" ], "_binaries": [ { "r": "4.6.0", "os": "linux", "version": "2.5.5", "date": "2026-01-24T08:01:02.000Z", "distro": "noble", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "b4fcb4d6cf241d6bb836b6766e5b3cc7a551b022fbf7685ee931878ce3a059d1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761" }, { "r": "4.5.2", "os": "linux", "version": "2.5.5", "date": "2026-01-24T08:00:56.000Z", "distro": "noble", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "97478312c7db4e0de5544df7270cba33daf4b6c0d0c231b1ba42e86e7349e79e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761" }, { "r": "4.6.0", "os": "mac", "version": "2.5.5", "date": "2026-01-24T08:00:22.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "d0b021277b686ed3552b39f68dffc79d9505d536d9522bc211711e3c2a70614f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761" }, { "r": "4.5.2", "os": "mac", "version": "2.5.5", "date": "2026-01-24T07:59:53.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "42b637623c3f62377d6e4fb3fcb750a0b7533634b883279a295d33a7cbf988ad", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761" }, { "r": "4.5.1", "os": "wasm", "version": "2.5.5", "date": "2026-01-24T08:00:51.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "f1c81f63bd473450d6a5390eb9174b7896a04072dd6d3d1cf689599f685a2c47", "status": "success", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761" }, { "r": "4.6.0", "os": "win", "version": "2.5.5", "date": "2026-01-24T08:00:01.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "ff39dab16bf60d86aca4b01e1c7b42e5d68dbf71269bcaf652dd7ab05d405dfd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761" }, { "r": "4.4.3", "os": "win", "version": "2.5.5", "date": "2026-01-24T07:59:58.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "8fb80b0b76476c2d46587e6ada52907ae0461eb21676a58f2e91e350b343bde5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761" }, { "r": "4.5.2", "os": "win", "version": "2.5.5", "date": "2026-01-24T07:59:43.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "730e996e5da514ba255295b38f32d193e48edf9c9a6c7e37ac79a6279c1607aa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/21311804761" } ] }