{
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  "Package": "mcbette",
  "Title": "Model Comparison Using 'babette'",
  "Version": "1.15.3",
  "Authors@R": "c(\nperson(\n\"Richèl J.C.\", \"Bilderbeek\",\nemail = \"rjcbilderbeek@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1107-7049\")\n),\nperson(\n\"Joëlle\", \"Barido-Sottani\", role = \"rev\",\ncomment = c(\"Joëlle reviewed the package for rOpenSci, see https://github.com/ropensci/software-review/issues/360\")\n),\nperson(\n\"Vikram\", \"Baliga\", role = \"rev\",\ncomment = c(\n\"Vikram reviewed the package for rOpenSci, see https://github.com/ropensci/software-review/issues/360\",\nORCID = \"0000-0002-9367-8974\"\n)\n)\n)",
  "Maintainer": "Richèl J.C. Bilderbeek <rjcbilderbeek@gmail.com>",
  "Description": "'BEAST2' (<https://www.beast2.org>) is a widely used\nBayesian phylogenetic tool, that uses DNA/RNA/protein data and\nmany model priors to create a posterior of jointly estimated\nphylogenies and parameters. 'mcbette' allows to do a Bayesian\nmodel comparison over some site and clock models, using\n'babette' (<https://github.com/ropensci/babette/>).",
  "License": "GPL-3",
  "RoxygenNote": "7.2.3",
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  "URL": "https://github.com/ropensci/mcbette/",
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  "Language": "en-US",
  "Encoding": "UTF-8",
  "SystemRequirements": "BEAST2 (https://www.beast2.org/)",
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  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2025-10-29 13:11:24 UTC",
  "RemoteUrl": "https://github.com/ropensci/mcbette",
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  "Author": "Richèl J.C. Bilderbeek [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-1107-7049>),\nJoëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci,\nsee https://github.com/ropensci/software-review/issues/360),\nVikram Baliga [rev] (Vikram reviewed the package for rOpenSci, see\nhttps://github.com/ropensci/software-review/issues/360, ORCID:\n<https://orcid.org/0000-0002-9367-8974>)",
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      "date": "2020-11-16"
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      "date": "2023-09-27"
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      "date": "2024-08-19"
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    "can_run_mcbette",
    "check_beast2_ns_pkg",
    "check_marg_liks",
    "check_mcbette_state",
    "est_marg_lik",
    "est_marg_liks",
    "get_mcbette_state",
    "get_test_marg_liks",
    "interpret_bayes_factor",
    "interpret_marg_lik_estimates",
    "mcbette_report",
    "mcbette_self_test",
    "plot_marg_liks",
    "set_mcbette_state"
  ],
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    {
      "page": "calc_weights",
      "title": "Calculate the weights for each marginal likelihood",
      "topics": [
        "calc_weights"
      ]
    },
    {
      "page": "can_run_mcbette",
      "title": "Can 'mcbette' run?",
      "topics": [
        "can_run_mcbette"
      ]
    },
    {
      "page": "check_beast2_ns_pkg",
      "title": "Checks if the BEAST2 'NS' package is installed.",
      "topics": [
        "check_beast2_ns_pkg"
      ]
    },
    {
      "page": "check_marg_liks",
      "title": "Check if the 'marg_liks' are of the same type as returned by est_marg_liks.",
      "topics": [
        "check_marg_liks"
      ]
    },
    {
      "page": "check_mcbette_state",
      "title": "Check if the 'mcbette_state' is valid.",
      "topics": [
        "check_mcbette_state"
      ]
    },
    {
      "page": "default_params_doc",
      "title": "Documentation of general function arguments. This function does nothing. It is intended to inherit function argument documentation.",
      "topics": [
        "default_params_doc"
      ]
    },
    {
      "page": "est_marg_lik",
      "title": "Estimate the marginal likelihood for an inference model.",
      "topics": [
        "est_marg_lik"
      ]
    },
    {
      "page": "est_marg_liks",
      "title": "Estimate the marginal likelihoods for one or more inference models",
      "topics": [
        "est_marg_liks"
      ]
    },
    {
      "page": "get_mcbette_state",
      "title": "Get the current state of mcbette",
      "topics": [
        "get_mcbette_state"
      ]
    },
    {
      "page": "get_test_marg_liks",
      "title": "Get testing 'marg_liks'",
      "topics": [
        "get_test_marg_liks"
      ]
    },
    {
      "page": "interpret_bayes_factor",
      "title": "Interpret a Bayes factor",
      "topics": [
        "interpret_bayes_factor"
      ]
    },
    {
      "page": "interpret_marg_lik_estimates",
      "title": "Interpret the marginal likelihood estimates",
      "topics": [
        "interpret_marg_lik_estimates"
      ]
    },
    {
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      "title": "Determine if the 'marg_liks' is valid",
      "topics": [
        "is_marg_liks"
      ]
    },
    {
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      "title": "Create a mcbette report, to be used when reporting bugs",
      "topics": [
        "mcbette_report"
      ]
    },
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      "title": "Performs a minimal mcbette run",
      "topics": [
        "mcbette_self_test"
      ]
    },
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      "title": "Plot the 'marg_liks'",
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        "plot_marg_liks"
      ]
    },
    {
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      "title": "Set the mcbette state.",
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      ]
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