{
  "_id": "69e88ad7c5259ad4cda080f0",
  "Package": "rmangal",
  "Type": "Package",
  "Title": "'Mangal' Client",
  "Version": "2.2.2",
  "Authors@R": "c(\nperson(given = \"Steve\", family = \"Vissault\", comment = c(ORCID = \"0000-0002-0866-4376\"),\nemail = \"s.vissault@yahoo.fr\", role = c(\"aut\", \"ctb\")),\nperson(given = \"Kevin\", family = \"Cazelles\", comment = c(ORCID = \"0000-0001-6619-9874\"),\nemail = \"kevin.cazelles@insileco.io\", role = c(\"aut\",\"cre\")),\nperson(given = \"Gabriel\", family = \"Bergeron\",\nemail = \"gabriel.bergeron3@usherbrooke.ca\", role = c(\"aut\",\"ctb\")),\nperson(given = \"Benjamin\", family = \"Mercier\",\nemail = \"Benjamin.B.Mercier@usherbrooke.ca\", role = c(\"aut\",\"ctb\")),\nperson(given = \"Clément\", family = \"Violet\",\nemail = \"Clement.Violet@etudiant.univ-brest.fr\", role = c(\"aut\",\"ctb\")),\nperson(given = \"Dominique\", family = \"Gravel\",\nemail = \"dominique.gravel@usherbrooke.ca\", role = c(\"aut\")),\nperson(given = \"Timothée\", family = \"Poisot\",\nemail = \"timothee.poisot@umontreal.ca\", role = c(\"aut\")),\nperson(given = \"Thomas Lin\", family = \"Pedersen\", role = \"rev\",\ncomment = c(ORCID = \"0000-0002-5147-4711\")),\nperson(given = \"Anna Willoughby\", role = \"rev\",\ncomment = c(ORCID = \"0000-0002-0504-0605\"))\n)",
  "Description": "An interface to the 'Mangal' database - a collection of\necological networks. This package includes functions to work\nwith the 'Mangal RESTful API' methods\n(<https://mangal-interactions.github.io/mangal-api/>).",
  "URL": "https://docs.ropensci.org/rmangal/, https://mangal.io,\nhttps://github.com/ropensci/rmangal",
  "BugReports": "https://github.com/ropensci/rmangal/issues",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Roxygen": "list(markdown = TRUE)",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libglpk-dev libxml2-dev libssl-dev",
  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2026-01-22 14:39:14 UTC",
  "RemoteUrl": "https://github.com/ropensci/rmangal",
  "RemoteRef": "main",
  "RemoteSha": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-04-22 08:17:46 UTC",
    "User": "root"
  },
  "Author": "Steve Vissault [aut, ctb] (ORCID:\n<https://orcid.org/0000-0002-0866-4376>),\nKevin Cazelles [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-6619-9874>),\nGabriel Bergeron [aut, ctb],\nBenjamin Mercier [aut, ctb],\nClément Violet [aut, ctb],\nDominique Gravel [aut],\nTimothée Poisot [aut],\nThomas Lin Pedersen [rev] (ORCID:\n<https://orcid.org/0000-0002-5147-4711>),\nAnna Willoughby [rev] (ORCID: <https://orcid.org/0000-0002-0504-0605>)",
  "Maintainer": "Kevin Cazelles <kevin.cazelles@insileco.io>",
  "MD5sum": "71688ba79f72bb39cb8c78a2eef5deb0",
  "_user": "ropensci",
  "_type": "src",
  "_file": "rmangal_2.2.2.tar.gz",
  "_fileid": "4558a89c7011b9a2f300b6f46da4d4c8f0555fd52c5ef41638ab8750e56d6804",
  "_filesize": 3949018,
  "_sha256": "4558a89c7011b9a2f300b6f46da4d4c8f0555fd52c5ef41638ab8750e56d6804",
  "_created": "2026-04-22T08:17:46.000Z",
  "_published": "2026-04-22T08:46:15.267Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 72466630194,
      "time": 211,
      "config": "linux-devel-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6573595422"
    },
    {
      "job": 72466630210,
      "time": 203,
      "config": "linux-release-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6573593504"
    },
    {
      "job": 72466630169,
      "time": 156,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6574023286"
    },
    {
      "job": 72466630246,
      "time": 103,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6574001157"
    },
    {
      "job": 72466169342,
      "time": 219,
      "config": "pkgdown",
      "r": "4.5.2",
      "check": "OK",
      "artifact": "6573542840"
    },
    {
      "job": 72466169333,
      "time": 201,
      "config": "source",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6573537920"
    },
    {
      "job": 72466630175,
      "time": 142,
      "config": "wasm-release",
      "r": "4.5.1",
      "check": "OK",
      "artifact": "6573576966"
    },
    {
      "job": 72466630200,
      "time": 480,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6573669562"
    },
    {
      "job": 72466630179,
      "time": 129,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6573573693"
    },
    {
      "job": 72466630195,
      "time": 471,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6573666795"
    }
  ],
  "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/24767775139",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ropensci/rmangal",
  "_commit": {
    "id": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
    "author": "Kevin Cazelles <kevin.cazelles@insileco.io>",
    "committer": "Kevin Cazelles <kevin.cazelles@insileco.io>",
    "message": ":bookmark: v2.2.2 [CRAN]\n",
    "time": 1769092754
  },
  "_maintainer": {
    "name": "Kevin Cazelles",
    "email": "kevin.cazelles@insileco.io",
    "login": "kevcaz",
    "mastodon": "@kevcaz@fosstodon.org",
    "linkedin": "in/kevin-cazelles-51552283",
    "orcid": "0000-0001-6619-9874",
    "uuid": 1583534
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "httr2",
      "version": ">= 1.2.0",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "version": ">= 2.0.0",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "version": ">= 1.5",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "ggraph",
      "version": ">= 2.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "mapview",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "sf",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "tidygraph",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    },
    {
      "package": "vcr",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "ropensci",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-46",
      "n": 24
    },
    {
      "week": "2025-49",
      "n": 4
    },
    {
      "week": "2026-04",
      "n": 5
    }
  ],
  "_tags": [],
  "_topics": [
    "ecology",
    "networks",
    "food webs",
    "interactions",
    "data\npublications",
    "open access"
  ],
  "_stars": 16,
  "_contributors": [
    {
      "user": "steveviss",
      "count": 286,
      "uuid": 1572124
    },
    {
      "user": "gabrielbouleau",
      "count": 132,
      "uuid": 35236908
    },
    {
      "user": "kevcaz",
      "count": 45,
      "uuid": 1583534
    },
    {
      "user": "clementviolet",
      "count": 6,
      "uuid": 22980442
    },
    {
      "user": "benmersci",
      "count": 3,
      "uuid": 46502839
    },
    {
      "user": "lstmemery",
      "count": 1,
      "uuid": 9874586
    },
    {
      "user": "maelle",
      "count": 1,
      "uuid": 8360597
    },
    {
      "user": "noamross",
      "count": 1,
      "uuid": 571752
    }
  ],
  "_userbio": {
    "uuid": 1200269,
    "type": "organization",
    "name": "rOpenSci",
    "description": "Tools and R Packages for Open Science"
  },
  "_downloads": {
    "count": 307,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rmangal"
  },
  "_devurl": "https://github.com/ropensci/rmangal",
  "_pkgdown": "https://docs.ropensci.org/rmangal/",
  "_searchresults": 30,
  "_metadata": {
    "review": {
      "id": 332,
      "status": "reviewed",
      "version": "1.9.1",
      "organization": "rOpenSci Software Review",
      "url": "https://github.com/ropensci/software-review/issues/332"
    },
    "ropensci_category": "data-access"
  },
  "_rbuild": "4.5.3",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rmangal.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ropensci/rmangal",
  "_realowner": "ropensci",
  "_cranurl": true,
  "_releases": [
    {
      "version": "2.0.0",
      "date": "2019-10-03"
    },
    {
      "version": "2.0.2",
      "date": "2020-10-13"
    },
    {
      "version": "2.1.0",
      "date": "2021-11-24"
    },
    {
      "version": "2.1.1",
      "date": "2022-05-16"
    },
    {
      "version": "2.1.2",
      "date": "2023-01-28"
    },
    {
      "version": "2.1.3",
      "date": "2023-03-30"
    },
    {
      "version": "2.2.2",
      "date": "2026-01-21"
    }
  ],
  "_exports": [
    "as.igraph",
    "combine_mgNetworks",
    "get_citation",
    "get_collection",
    "get_network_by_id",
    "get_network_by_id_indiv",
    "rmangal_request",
    "rmangal_request_singleton",
    "search_datasets",
    "search_interactions",
    "search_networks",
    "search_networks_sf",
    "search_nodes",
    "search_references",
    "search_taxonomy"
  ],
  "_datasets": [
    {
      "name": "rmangal_endpoints",
      "title": "Mangal API's endpoints",
      "object": "rmangal_endpoints",
      "class": [
        "data.frame"
      ],
      "fields": [
        "name",
        "path"
      ],
      "rows": 9,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "as.igraph",
      "title": "Coerce 'mgNetworksCollection' or 'mgNetwork' objects to 'igraph' objects.",
      "topics": [
        "as.igraph.mgNetwork",
        "as.igraph.mgNetworksCollection"
      ]
    },
    {
      "page": "avail_type",
      "title": "List interactions type contained in mangal-db",
      "topics": [
        "avail_type"
      ]
    },
    {
      "page": "combine_mgNetworks",
      "title": "Combine Mangal networks",
      "topics": [
        "combine_mgNetworks"
      ]
    },
    {
      "page": "get_citation",
      "title": "Retrieve all references pertaining to the networks collection or individual network",
      "topics": [
        "get_citation",
        "get_citation.mgNetwork",
        "get_citation.mgNetworksCollection"
      ]
    },
    {
      "page": "get_collection",
      "title": "Get a collection of networks",
      "topics": [
        "get_collection",
        "get_collection.default",
        "get_collection.mgSearchDatasets",
        "get_collection.mgSearchInteractions",
        "get_collection.mgSearchNetworks",
        "get_collection.mgSearchNodes",
        "get_collection.mgSearchReferences",
        "get_collection.mgSearchTaxonomy"
      ]
    },
    {
      "page": "get_network_by_id",
      "title": "Retrieve network information, nodes, edges and references for a given set of Mangal network IDs",
      "topics": [
        "get_network_by_id",
        "get_network_by_id_indiv",
        "print.mgNetwork",
        "print.mgNetworksCollection",
        "summary.mgNetwork",
        "summary.mgNetworksCollection"
      ]
    },
    {
      "page": "rmangal_endpoints",
      "title": "Mangal API's endpoints",
      "topics": [
        "rmangal_endpoints"
      ]
    },
    {
      "page": "rmangal_request",
      "title": "Low-level request function for the Mangal API",
      "topics": [
        "rmangal_request",
        "rmangal_request_singleton"
      ]
    },
    {
      "page": "search_datasets",
      "title": "Query datasets",
      "topics": [
        "search_datasets"
      ]
    },
    {
      "page": "search_interactions",
      "title": "Query interactions",
      "topics": [
        "search_interactions"
      ]
    },
    {
      "page": "search_networks",
      "title": "Query networks",
      "topics": [
        "search_networks",
        "search_networks_sf"
      ]
    },
    {
      "page": "search_nodes",
      "title": "Query nodes",
      "topics": [
        "search_nodes"
      ]
    },
    {
      "page": "search_references",
      "title": "Query references",
      "topics": [
        "search_references"
      ]
    },
    {
      "page": "search_taxonomy",
      "title": "Query taxonomy",
      "topics": [
        "search_taxonomy"
      ]
    }
  ],
  "_pkglogo": "https://github.com/ropensci/rmangal/raw/main/man/figures/logo.png",
  "_readme": "https://github.com/ropensci/rmangal/raw/main/README.md",
  "_rundeps": [
    "askpass",
    "cli",
    "cpp11",
    "curl",
    "glue",
    "httr2",
    "igraph",
    "jsonlite",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "openssl",
    "pkgconfig",
    "R6",
    "rappdirs",
    "rlang",
    "sys",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "rmangal.Rmd",
      "filename": "rmangal.html",
      "title": "Get started with rmangal",
      "author": "Steve Vissault, Kevin Cazelles",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Context",
        "The Mangal project",
        "Data structure",
        "Authentication",
        "How to use rmangal",
        "Overall approach",
        "Search functions",
        "Search and list available datasets",
        "Finding a specific network",
        "Search for a specific taxon",
        "Get networks associated with a search_* object",
        "Integrated workflow with rmangal",
        "Batch analysis",
        "Geolocate Mangal networks with sf",
        "Taxonomic analysis",
        "Network analysis with igraph",
        "Network manipulation and visualization with tidygraph and ggraph",
        "Creating a list references for a set of networks",
        "References"
      ],
      "created": "2019-06-16 14:48:13",
      "modified": "2026-01-22 14:39:14",
      "commits": 43
    }
  ],
  "_score": 6.702430536445526,
  "_indexed": true,
  "_nocasepkg": "rmangal",
  "_universes": [
    "ropensci",
    "kevcaz"
  ],
  "_binaries": [
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.2.2",
      "date": "2026-04-22T08:20:45.000Z",
      "distro": "noble",
      "commit": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
      "fileid": "d259e0ce48199512dd253a6cfdaf3f2b2165a4ef4567003703ee166b67302931",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24767775139"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.2.2",
      "date": "2026-04-22T08:45:13.000Z",
      "commit": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
      "fileid": "1c35dbc07d244ab7903fd2ef8c556ef26ab2a49035c4388a148f6d0006f3d24a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24767775139"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.2.2",
      "date": "2026-04-22T08:44:12.000Z",
      "commit": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
      "fileid": "2218d53e7208a35fb6c92bbd64bd9216ded4f715d6842dccbe9171167f7c3480",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24767775139"
    },
    {
      "r": "4.5.1",
      "os": "wasm",
      "version": "2.2.2",
      "date": "2026-04-22T08:20:24.000Z",
      "commit": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
      "fileid": "895d2460cab82f3fa6a4451791166921b68ff9d8df857d188d9e9c507d511917",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24767775139"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.2.2",
      "date": "2026-04-22T08:25:03.000Z",
      "commit": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
      "fileid": "572d3852ec6fea2bfc889c8b0e69163148fc1b6d3af4cb0626484b2531bbbe09",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24767775139"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.2.2",
      "date": "2026-04-22T08:19:15.000Z",
      "commit": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
      "fileid": "7fdf861081c0445c9a7fbca8d7ad94bc2001004825f6e473d651f2ec8cc49b37",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24767775139"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.2.2",
      "date": "2026-04-22T08:24:56.000Z",
      "commit": "9c566bad9992c02dfcb32bc2cfaaf665f86e7a5f",
      "fileid": "465ce5db9c8919ca3c713339bee6da87aca530ba29196d959895d0ff2aa2caa0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/24767775139"
    }
  ]
}