{
  "_id": "6a06f0d0be3e45e78450e885",
  "Package": "taxa",
  "Type": "Package",
  "Title": "Classes for Storing and Manipulating Taxonomic Data",
  "Description": "Provides classes for storing and manipulating taxonomic\ndata. Most of the classes can be treated like base R vectors\n(e.g. can be used in tables as columns and can be named).\nVectorized classes can store taxon names and authorities, taxon\nIDs from databases, taxon ranks, and other types of\ninformation. More complex classes are provided to store\ntaxonomic trees and user-defined data associated with them.",
  "Version": "0.4.4",
  "Authors@R": "c(\nperson(\"Scott\", \"Chamberlain\", role = \"aut\",\nemail = \"myrmecocystus+r@gmail.com\", comment = c(ORCID = \"0000-0003-1444-9135\")),\nperson(\"Zachary\", \"Foster\", role = c(\"aut\", \"cre\"),\nemail = \"zacharyfoster1989@gmail.com\", comment = c(ORCID = \"0000-0002-5075-0948\"))\n)",
  "LazyLoad": "yes",
  "Encoding": "UTF-8",
  "License": "MIT + file LICENSE",
  "URL": "https://docs.ropensci.org/taxa/, https://github.com/ropensci/taxa",
  "BugReports": "https://github.com/ropensci/taxa/issues",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2025-07-28 20:21:36 UTC",
  "RemoteUrl": "https://github.com/ropensci/taxa",
  "RemoteRef": "master",
  "RemoteSha": "f8cc3ab7084d86e983c075e22f48a425205eae57",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 09:53:53 UTC",
    "User": "root"
  },
  "Author": "Scott Chamberlain [aut] (ORCID:\n<https://orcid.org/0000-0003-1444-9135>),\nZachary Foster [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5075-0948>)",
  "Maintainer": "Zachary Foster <zacharyfoster1989@gmail.com>",
  "MD5sum": "fba4e914c44abb6267b64ff1b17fbf3d",
  "_user": "ropensci",
  "_type": "src",
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  "_created": "2026-05-15T09:53:53.000Z",
  "_published": "2026-05-15T10:09:20.453Z",
  "_distro": "noble",
  "_jobs": [
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    "author": "Zachary Foster <fosterz@pop-os.localdomain>",
    "committer": "Zachary Foster <fosterz@pop-os.localdomain>",
    "message": "0.4.4 release\n",
    "time": 1753734096
  },
  "_maintainer": {
    "name": "Zachary Foster",
    "email": "zacharyfoster1989@gmail.com",
    "login": "zachary-foster",
    "uuid": 6090555,
    "orcid": "0000-0002-5075-0948"
  },
  "_registered": true,
  "_dependencies": [
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      "version": ">= 3.0.2",
      "role": "Depends"
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    {
      "package": "vctrs",
      "role": "Depends"
    },
    {
      "package": "dplyr",
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    {
      "package": "magrittr",
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    {
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    {
      "package": "rlang",
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      "package": "stringr",
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    {
      "package": "crayon",
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    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "pillar",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "viridisLite",
      "role": "Imports"
    },
    {
      "package": "cli",
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    },
    {
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      "version": ">= 6.0.1",
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  "_owner": "ropensci",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
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      "n": 4
    }
  ],
  "_tags": [
    {
      "name": "v0.4.4",
      "date": "2025-07-28"
    }
  ],
  "_topics": [
    "taxonomy",
    "biology",
    "hierarchy",
    "data-cleaning",
    "taxon"
  ],
  "_stars": 51,
  "_contributors": [
    {
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    },
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    "type": "organization",
    "name": "rOpenSci",
    "description": "Tools and R Packages for Open Science"
  },
  "_downloads": {
    "count": 369,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/taxa"
  },
  "_mentions": 3,
  "_devurl": "https://github.com/ropensci/taxa",
  "_pkgdown": "https://docs.ropensci.org/taxa/",
  "_searchresults": 182,
  "_metadata": {
    "ropensci_category": "taxonomy"
  },
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/taxa.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ropensci/taxa",
  "_realowner": "ropensci",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2017-07-16"
    },
    {
      "version": "0.2.0",
      "date": "2017-12-19"
    },
    {
      "version": "0.2.1",
      "date": "2018-05-03"
    },
    {
      "version": "0.3.1",
      "date": "2018-08-08"
    },
    {
      "version": "0.3.2",
      "date": "2019-01-02"
    },
    {
      "version": "0.3.3",
      "date": "2020-02-25"
    },
    {
      "version": "0.3.4",
      "date": "2020-04-29"
    },
    {
      "version": "0.4.0",
      "date": "2021-07-13"
    },
    {
      "version": "0.4.1",
      "date": "2022-03-11"
    },
    {
      "version": "0.4.2",
      "date": "2022-04-12"
    },
    {
      "version": "0.4.3",
      "date": "2024-02-20"
    },
    {
      "version": "0.4.4",
      "date": "2025-08-01"
    }
  ],
  "_exports": [
    "%>%",
    "%in%",
    "as_data_frame",
    "as_taxon",
    "classification",
    "contains",
    "db_ref",
    "ends_with",
    "everything",
    "internodes",
    "is_classification",
    "is_internode",
    "is_leaf",
    "is_root",
    "is_stem",
    "is_taxon",
    "is_taxon_authority",
    "is_taxon_db",
    "is_taxon_id",
    "is_taxon_rank",
    "is_taxonomy",
    "leaves",
    "matches",
    "n_leaves",
    "n_subtaxa",
    "n_supertaxa",
    "num_range",
    "one_of",
    "roots",
    "starts_with",
    "stems",
    "subtaxa",
    "supertaxa",
    "tax_auth",
    "tax_auth<-",
    "tax_author",
    "tax_author<-",
    "tax_cite",
    "tax_cite<-",
    "tax_date",
    "tax_date<-",
    "tax_db",
    "tax_db<-",
    "tax_id",
    "tax_id<-",
    "tax_name",
    "tax_name<-",
    "tax_rank",
    "tax_rank<-",
    "taxon",
    "taxon_authority",
    "taxon_db",
    "taxon_id",
    "taxon_rank",
    "taxonomy"
  ],
  "_help": [
    {
      "page": "grapes-in-grapes",
      "title": "Value matching for taxa package",
      "topics": [
        "%in%"
      ]
    },
    {
      "page": "as_data_frame",
      "title": "Convert a taxa object to a 'data.frame'",
      "topics": [
        "as_data_frame"
      ]
    },
    {
      "page": "as_taxon",
      "title": "Convert to a taxon vector",
      "topics": [
        "as_taxon"
      ]
    },
    {
      "page": "classification",
      "title": "Taxon class",
      "concept": [
        "classes"
      ],
      "topics": [
        "classification"
      ]
    },
    {
      "page": "db_ref",
      "title": "Valid taxonomy databases",
      "topics": [
        "db_ref"
      ]
    },
    {
      "page": "internodes",
      "title": "Get internodes",
      "concept": [
        "internode functions",
        "taxonomy functions"
      ],
      "topics": [
        "internodes"
      ]
    },
    {
      "page": "is_classification",
      "title": "Check if is a classification",
      "topics": [
        "is_classification"
      ]
    },
    {
      "page": "is_internode",
      "title": "Check if taxa are internodes",
      "concept": [
        "internode functions"
      ],
      "topics": [
        "is_internode"
      ]
    },
    {
      "page": "is_leaf",
      "title": "Check if taxa are leaves",
      "concept": [
        "leaf functions"
      ],
      "topics": [
        "is_leaf"
      ]
    },
    {
      "page": "is_root",
      "title": "Test if taxa are roots",
      "concept": [
        "root functions"
      ],
      "topics": [
        "is_root"
      ]
    },
    {
      "page": "is_stem",
      "title": "Check if taxa are stems",
      "concept": [
        "stem functions"
      ],
      "topics": [
        "is_stem"
      ]
    },
    {
      "page": "is_taxon",
      "title": "Check if something is a taxon object",
      "topics": [
        "is_taxon"
      ]
    },
    {
      "page": "is_taxon_authority",
      "title": "Check if is a taxon_authority",
      "topics": [
        "is_taxon_authority"
      ]
    },
    {
      "page": "is_taxon_db",
      "title": "Check if something is a taxon_db",
      "topics": [
        "is_taxon_db"
      ]
    },
    {
      "page": "is_taxon_id",
      "title": "Check if something is a taxon_id object",
      "topics": [
        "is_taxon_id"
      ]
    },
    {
      "page": "is_taxon_rank",
      "title": "Check if something is a taxon_rank",
      "topics": [
        "is_taxon_rank"
      ]
    },
    {
      "page": "is_taxonomy",
      "title": "Check if something is a taxonomy",
      "topics": [
        "is_taxonomy"
      ]
    },
    {
      "page": "leaves",
      "title": "Get leaves",
      "concept": [
        "leaf functions",
        "taxonomy functions"
      ],
      "topics": [
        "leaves"
      ]
    },
    {
      "page": "n_leaves",
      "title": "Number of leaves per taxon",
      "concept": [
        "leaf functions"
      ],
      "topics": [
        "n_leaves"
      ]
    },
    {
      "page": "n_subtaxa",
      "title": "Number of subtaxa per taxon",
      "concept": [
        "subtaxa functions"
      ],
      "topics": [
        "n_subtaxa"
      ]
    },
    {
      "page": "n_supertaxa",
      "title": "Number of supertaxa per taxon",
      "concept": [
        "supertaxa functions"
      ],
      "topics": [
        "n_supertaxa"
      ]
    },
    {
      "page": "roots",
      "title": "Get root taxa",
      "concept": [
        "root functions",
        "taxonomy functions"
      ],
      "topics": [
        "roots"
      ]
    },
    {
      "page": "stems",
      "title": "Get stems",
      "concept": [
        "stem functions",
        "taxonomy functions"
      ],
      "topics": [
        "stems"
      ]
    },
    {
      "page": "subtaxa",
      "title": "Get subtaxa",
      "concept": [
        "subtaxa functions",
        "taxonomy functions"
      ],
      "topics": [
        "subtaxa"
      ]
    },
    {
      "page": "supertaxa",
      "title": "Get supertaxa",
      "concept": [
        "supertaxa functions",
        "taxonomy functions"
      ],
      "topics": [
        "supertaxa"
      ]
    },
    {
      "page": "tax_auth",
      "title": "Set and get taxon authorities",
      "topics": [
        "tax_auth",
        "tax_auth.taxa_classification",
        "tax_auth.taxa_taxon",
        "tax_auth.taxa_taxonomy",
        "tax_auth<-",
        "tax_auth<-.taxa_classification",
        "tax_auth<-.taxa_taxon",
        "tax_auth<-.taxa_taxonomy"
      ]
    },
    {
      "page": "tax_author",
      "title": "Set and get taxon authors",
      "topics": [
        "tax_author",
        "tax_author.taxa_classification",
        "tax_author.taxa_taxon",
        "tax_author.taxa_taxonomy",
        "tax_author.taxa_taxon_authority",
        "tax_author<-",
        "tax_author<-.taxa_classification",
        "tax_author<-.taxa_taxon",
        "tax_author<-.taxa_taxonomy",
        "tax_author<-.taxa_taxon_authority"
      ]
    },
    {
      "page": "tax_cite",
      "title": "Set and get taxon authority citations",
      "topics": [
        "tax_cite",
        "tax_cite.taxa_classification",
        "tax_cite.taxa_taxon",
        "tax_cite.taxa_taxonomy",
        "tax_cite.taxa_taxon_authority",
        "tax_cite<-",
        "tax_cite<-.taxa_classification",
        "tax_cite<-.taxa_taxon",
        "tax_cite<-.taxa_taxonomy",
        "tax_cite<-.taxa_taxon_authority"
      ]
    },
    {
      "page": "tax_date",
      "title": "Set and get taxon authority dates",
      "topics": [
        "tax_date",
        "tax_date.taxa_classification",
        "tax_date.taxa_taxon",
        "tax_date.taxa_taxonomy",
        "tax_date.taxa_taxon_authority",
        "tax_date<-",
        "tax_date<-.taxa_classification",
        "tax_date<-.taxa_taxon",
        "tax_date<-.taxa_taxonomy",
        "tax_date<-.taxa_taxon_authority"
      ]
    },
    {
      "page": "tax_db",
      "title": "Set and get taxon ID databases",
      "topics": [
        "tax_db",
        "tax_db.taxa_classification",
        "tax_db.taxa_taxon",
        "tax_db.taxa_taxonomy",
        "tax_db.taxa_taxon_id",
        "tax_db<-",
        "tax_db<-.taxa_classification",
        "tax_db<-.taxa_taxon",
        "tax_db<-.taxa_taxonomy",
        "tax_db<-.taxa_taxon_id"
      ]
    },
    {
      "page": "tax_id",
      "title": "Set and get taxon IDs",
      "topics": [
        "tax_id",
        "tax_id.taxa_classification",
        "tax_id.taxa_taxon",
        "tax_id.taxa_taxonomy",
        "tax_id<-",
        "tax_id<-.taxa_classification",
        "tax_id<-.taxa_taxon",
        "tax_id<-.taxa_taxonomy"
      ]
    },
    {
      "page": "tax_name",
      "title": "Set and get taxon names",
      "topics": [
        "tax_name",
        "tax_name.taxa_classification",
        "tax_name.taxa_taxon",
        "tax_name.taxa_taxonomy",
        "tax_name<-",
        "tax_name<-.taxa_classification",
        "tax_name<-.taxa_taxon",
        "tax_name<-.taxa_taxonomy"
      ]
    },
    {
      "page": "tax_rank",
      "title": "Set and get taxon ranks",
      "topics": [
        "tax_rank",
        "tax_rank.taxa_classification",
        "tax_rank.taxa_taxon",
        "tax_rank.taxa_taxonomy",
        "tax_rank<-",
        "tax_rank<-.taxa_classification",
        "tax_rank<-.taxa_taxon",
        "tax_rank<-.taxa_taxonomy"
      ]
    },
    {
      "page": "taxa_taxon_authority",
      "title": "Taxon authority class",
      "topics": [
        "taxa_taxon_authority",
        "taxa_taxon_authority-class"
      ]
    },
    {
      "page": "taxa_taxon_db",
      "title": "Taxon database class",
      "topics": [
        "taxa_taxon_db",
        "taxa_taxon_db-class"
      ]
    },
    {
      "page": "taxa_taxon_id",
      "title": "Taxon ID class",
      "topics": [
        "taxa_taxon_id",
        "taxa_taxon_id-class"
      ]
    },
    {
      "page": "taxa_taxon_rank",
      "title": "Taxon rank class",
      "topics": [
        "taxa_taxon_rank",
        "taxa_taxon_rank-class"
      ]
    },
    {
      "page": "taxa_taxon",
      "title": "Taxon class",
      "topics": [
        "taxa_taxon",
        "taxa_taxon-class"
      ]
    },
    {
      "page": "taxa_taxonomy",
      "title": "Taxonomy class",
      "topics": [
        "taxa_taxonomy",
        "taxa_taxonomy-class"
      ]
    },
    {
      "page": "taxon",
      "title": "Taxon class",
      "concept": [
        "classes"
      ],
      "topics": [
        "taxon"
      ]
    },
    {
      "page": "taxon_authority",
      "title": "Taxon authority class",
      "concept": [
        "classes"
      ],
      "topics": [
        "taxon_authority"
      ]
    },
    {
      "page": "taxon_db",
      "title": "Taxon database class",
      "concept": [
        "classes"
      ],
      "topics": [
        "taxon_db"
      ]
    },
    {
      "page": "taxon_id",
      "title": "Taxon ID class",
      "concept": [
        "classes"
      ],
      "topics": [
        "taxon_id"
      ]
    },
    {
      "page": "taxon_rank",
      "title": "Taxon rank class",
      "concept": [
        "classes"
      ],
      "topics": [
        "taxon_rank"
      ]
    }
  ],
  "_readme": "https://github.com/ropensci/taxa/raw/master/README.md",
  "_rundeps": [
    "cli",
    "crayon",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 6.745792814466655,
  "_indexed": true,
  "_nocasepkg": "taxa",
  "_universes": [
    "ropensci",
    "zachary-foster"
  ],
  "_binaries": [
    {
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