{
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"Title": "Handling Taxonomic Lists",
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"Description": "Handling taxonomic lists through objects of class\n'taxlist'. This package provides functions to import species\nlists from 'Turboveg'\n() and the\npossibility to create backups from resulting R-objects. Also\nquick displays are implemented as summary-methods.",
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"taxon_names<-",
"taxon_relations",
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"taxon_traits",
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"taxon_views",
"taxon_views<-",
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"tv2taxlist",
"update_concept",
"update_name",
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"title": "List of vascular plants from East Africa",
"object": "Easplist",
"class": [
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],
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"table": false,
"tojson": false
}
],
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{
"page": "accepted_name",
"title": "Manage accepted names, synonyms and basionyms",
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"accepted_name,taxlist-method",
"accepted_name.taxlist",
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{
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{
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"coerce,taxlist,list-method",
"S4_to_list"
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{
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"load_last",
"sort_backups"
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},
{
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{
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"clean_strings,factor-method"
]
},
{
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"count_taxa,character,missing-method",
"count_taxa,factor,missing-method",
"count_taxa,formula,taxlist-method",
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]
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{
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"title": "Deprecated functions",
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"taxmap2taxlist",
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{
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"df2taxlist,data.frame-method",
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]
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{
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]
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{
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{
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"topics": [
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"Extract",
"[",
"[,taxlist-method"
]
},
{
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"title": "Retrieve children or parents of taxon concepts",
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"get_children.taxlist",
"get_parents",
"get_parents,taxlist-method",
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]
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{
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]
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{
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{
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{
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"levels.taxlist",
"levels<-",
"levels<-,taxlist-method",
"levels<-.taxlist"
]
},
{
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"match_names,character,missing-method",
"match_names,character,taxlist-method"
]
},
{
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]
},
{
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"title": "Merge concepts or move names",
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"merge_taxa.taxlist"
]
},
{
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"title": "Merge taxa to their respective parents",
"topics": [
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"merge_to_parent,taxlist-method",
"merge_to_parent.taxlist"
]
},
{
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]
},
{
"page": "print_name",
"title": "Format usage names for publications",
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"print_name.character",
"print_name.taxlist"
]
},
{
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"title": "Prune not used taxonomic ranks",
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"prune_levels.taxlist"
]
},
{
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"title": "Re-index elements of taxlist objects",
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"reindex.taxlist",
"reindex<-",
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{
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]
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{
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{
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"title": "Subset method for taxlist objects",
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},
{
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"title": "Print overviews for taxlist Objects and their content",
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"show,taxlist-method",
"summary",
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]
},
{
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"title": "Set taxonomic information as taxon traits",
"topics": [
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{
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{
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"taxlist2df,taxlist-method",
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]
},
{
"page": "taxon_names",
"title": "Handle information on taxon usage names.",
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"add_synonym,taxlist-method",
"add_synonym.taxlist",
"delete_name",
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"title": "Retrieve or replace slot taxonRelations in taxlist objects",
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"taxon_relations.taxlist",
"taxon_relations<-",
"taxon_relations<-,taxlist-method",
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{
"page": "tv2taxlist",
"title": "Import species lists from Turboveg databases",
"topics": [
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]
}
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"title": "Applying taxlist to species lists on diversity records",
"author": "Miguel Alvarez",
"engine": "knitr::rmarkdown",
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"1. Getting started",
"2. Extracting a species list from a vegetation table",
"2.1 Example data",
"2.2 From plain list to taxlist",
"3. Built-in data set",
"3.1 Easplist",
"3.2 Access to slots",
"3.3 Subsets",
"3.4 Hierarchical structure",
"4. Applying taxlist to syntaxonomic schemes",
"4.1 Example of a phytosociological classification",
"4.2 Building the taxlist object"
],
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