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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "biomartr" in publications use:'
type: software
license: GPL-2.0-only
title: 'biomartr: Genomic Data Retrieval'
version: 1.0.10
identifiers:
- type: doi
  value: 10.32614/CRAN.package.biomartr
abstract: Perform large scale genomic data retrieval and functional annotation retrieval.
  This package aims to provide users with a standardized way to automate genome, proteome,
  'RNA', coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq',
  'NCBI Genbank', 'ENSEMBL', and 'UniProt' databases. Furthermore, an interface to
  the 'BioMart' database (Smedley et al. (2009) <https://doi.org/10.1186/1471-2164-10-22>)
  allows users to retrieve functional annotation for genomic loci. In addition, users
  can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) <https://doi.org/10.1093/nar/gkl842>),
  'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <https://doi.org/10.1093/nar/gks1195>),
  etc. with only one command.
authors:
- family-names: Drost
  given-names: Hajk-Georg
  email: hajk-georg.drost@tuebingen.mpg.de
  orcid: https://orcid.org/0000-0002-1567-306X
- family-names: Tjeldnes
  given-names: Haakon
  email: hauken_heyken@hotmail.com
preferred-citation:
  type: manual
  title: 'Biomartr: genomic data retrieval with R'
  authors:
  - family-names: Hajk-Georg
    given-names: Drost
  - family-names: Jerzy
    given-names: Paszkowski
  entry: Article
  journal: Bioinformatics
  year: '2017'
  url: https://academic.oup.com/bioinformatics/article/doi/10.1093/bioinformatics/btw821/2931816/Biomartr-genomic-data-retrieval-with-R
repository: https://ropensci.r-universe.dev
repository-code: https://github.com/ropensci/biomartr
commit: 21aa0a2e0c3086efb3e2988945e0d707d6c413e4
url: https://docs.ropensci.org/biomartr/
contact:
- family-names: Drost
  given-names: Hajk-Georg
  email: hajk-georg.drost@tuebingen.mpg.de
  orcid: https://orcid.org/0000-0002-1567-306X
keywords:
- BioMart
- genomic-data-retrieval
- annotation-retrieval
- database-retrieval
- NCBI
- ENSEMBL
- biological-data-retrieval