NEWS
eDNAjoint 0.3 (2025-01-17)
User-facing changes
- Changed function names to snakemake (i.e.,
jointModel() to joint_model())
- Changed function arguments to snakemake (i.e.,
n.chain to n_chain)
- Changed input data names to snakemake (i.e.,
qPCR.N to pcr_n)
- Changed MCMC sampling arguments so the
n_iter includes all MCMC iterations, including the number of warm-up iterations specified in n_warmup. Changed default values accordingly.
Non-user facing changes
- Collapsed Stan files with more conditional statements to accommodate more model variations within one file
- Added Stan helper functions
- Moved
joint_model and traditional_model helper functions to new files
- Linted package to match default
lintr style
- Updated compilation flags to allow installation from source on Windows RStudio
eDNAjoint 0.2 (2024-10-08)
- Package source code now hosted at https://github.com/ropensci/eDNAjoint
- Improved programming (i.e., reduced cyclomatic complexity, spacing, etc.)
- Added functionality to accommodate semi-paired data (i.e., traditional samples not collected at all surveyed sites).
- Improved integration of package print statements with user guide.
- Updated default calculation of initial values for MCMC.
eDNAjoint 0.1
- Initial version of the package on GitHub.