First rOpenSci version
Transfer ownership to rOpenSci
Update README
Add .github files
Add reviewers to DESCRIPTION
The goal of this version is to address all issues raised by the rOpenSci editor (Scott Chamberlain) and my two reviewers: Jessica Minnier and Zachary Foster.
Added URL tag to DESCRIPTION
Added BugReports tag to DESCRIPTION
Wrapped all lines longer than 80 characters
Removed unused imports readr and tidyr
Split test functions into smaller test files
Add skip_on_cran and skip_on_travis to retrieve_onekp test
Save metadata as package data: data(onekp)
Add minimum version to taxizedb
Add space between equal signs in argument lists
Change package name from oneKP to onekp
Let user set the download directory (defaulting to a tempdir).
Re-export the magrittr %>% operator
Update README
Add CONDUCT.md
Add R devel test to travis
More package-level documentation
Do not export print.OneKP function
Add documentation details to retrieve_onekp
Update intro vignette
Do not run examples that access the internet (call retrieve_onekp)
There was some overlap between the two reviews, here I just list updates made that are unique to this review.
Clarify filter_by_code and filter_by_species examples
Cleanup the download documentation
Add absolute parameter to download_* functions. If TRUE, this returns
the absolute path to the retrieved data.
Add handling for downloading nothing: if everything is filtered out, just return an empty character vector.
Add test coverage for corner cases
filtering by clade with a clade that is not in the NCBI common tree raises an error.
filtering with valid input, but where no rows are selected, returns a OneKP object with 0 rows (no error).
download an empty object returns an empty vector of filenames (no error)