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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "treeio" in publications use:'
type: software
license: Artistic-2.0
title: 'treeio: Base Classes and Functions for Phylogenetic Tree Input and Output'
version: 1.31.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.treeio
abstract: '''treeio'' is an R package to make it easier to import and store phylogenetic
  tree with associated data; and to link external data from different sources to phylogeny.
  It also supports exporting phylogenetic tree with heterogeneous associated data
  to a single tree file and can be served as a platform for merging tree with associated
  data and converting file formats.'
authors:
- family-names: Yu
  given-names: Guangchuang
  email: guangchuangyu@gmail.com
  orcid: https://orcid.org/0000-0002-6485-8781
preferred-citation:
  type: book
  title: Data Integration, Manipulation and Visualization of Phylogenetic Treess
  authors:
  - family-names: Yu
    given-names: Guangchuang
    email: guangchuangyu@gmail.com
    orcid: https://orcid.org/0000-0002-6485-8781
  publisher:
    name: Chapman and Hall/CRC
  year: '2022'
  edition: 1st edition
  url: https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/
repository: https://ropensci.r-universe.dev
repository-code: https://github.com/YuLab-SMU/treeio
commit: 3f53eecb86689c317f5ca4b130d89a24a763bd0f
url: https://yulab-smu.top/contribution-tree-data/
contact:
- family-names: Yu
  given-names: Guangchuang
  email: guangchuangyu@gmail.com
  orcid: https://orcid.org/0000-0002-6485-8781
references:
- type: article
  title: 'treeio: an R package for phylogenetic tree input and output with richly
    annotated and associated data.'
  authors:
  - family-names: Wang
    given-names: Li-Gen
  - family-names: Lam
    given-names: Tommy Tsan-Yuk
  - family-names: Xu
    given-names: Shuangbin
  - family-names: Dai
    given-names: Zehan
  - family-names: Zhou
    given-names: Lang
  - family-names: Feng
    given-names: Tingze
  - family-names: Guo
    given-names: Pingfan
  - family-names: Dunn
    given-names: Casey W.
  - family-names: Jones
    given-names: Bradley R.
  - family-names: Bradley
    given-names: Tyler
  - family-names: Zhu
    given-names: Huachen
  - family-names: Guan
    given-names: Yi
  - family-names: Jiang
    given-names: Yong
  - family-names: Yu
    given-names: Guangchuang
  year: '2020'
  journal: Molecular Biology and Evolution
  volume: '37'
  issue: '2'
  doi: 10.1093/molbev/msz240
  start: 599-603