Package: EDIutils 2.0.0

Colin Smith

EDIutils: An API Client for the Environmental Data Initiative Repository

A client for the Environmental Data Initiative repository REST API. The 'EDI' data repository <https://portal.edirepository.org/nis/home.jsp> is for publication and reuse of ecological data with emphasis on metadata accuracy and completeness. It is built upon the 'PASTA+' software stack <https://pastaplus-core.readthedocs.io/en/latest/index.html#> and was developed in collaboration with the US 'LTER' Network <https://lternet.edu/>. 'EDIutils' includes functions to search and access existing data, evaluate and upload new data, and assist other data management tasks common to repository users.

Authors:Colin Smith [aut, cre], Corinna Gries [ctb], Jasmine Lai [rev], Rodrigo Pires [rev]

EDIutils_2.0.0.tar.gz
EDIutils_2.0.0.zip(r-4.6)EDIutils_2.0.0.zip(r-4.5)EDIutils_2.0.0.zip(r-4.4)
EDIutils_2.0.0.tgz(r-4.6-any)EDIutils_2.0.0.tgz(r-4.5-any)
EDIutils_2.0.0.tar.gz(r-4.6-any)EDIutils_2.0.0.tar.gz(r-4.5-any)
EDIutils_2.0.0.tgz(r-4.5-emscripten)
EDIutils.pdf |EDIutils.html✨
EDIutils/json (API)
NEWS

# Install 'EDIutils' in R:
install.packages('EDIutils', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #498

Bug tracker:https://github.com/ropensci/ediutils/issues

Pkgdown/docs site:https://docs.ropensci.org

On CRAN:

Conda:

ecologyeml-metadataopen-accessopen-dataresearch-data-managementresearch-data-repository

6.66 score 10 stars 183 scripts 237 downloads 73 exports 11 dependencies

Last updated from:f289d3b7f0 (on main). Checks:10 OK. Indexed: yes.

TargetResultTotal timeArtifact
linux-devel-x86_64OK132
pkgdown docsOK193
source / vignettesOK164
linux-release-x86_64OK137
macos-devel-arm64OK151
macos-release-arm64OK106
windows-develOK85
windows-releaseOK120
windows-oldrelOK190
wasm-releaseOK113

Exports:check_status_createcheck_status_evaluatecheck_status_updatecreate_data_packagecreate_data_package_archivecreate_dncreate_event_subscriptioncreate_journal_citationcreate_reservationdelete_event_subscriptiondelete_journal_citationdelete_reservationevaluate_data_packageexecute_event_subscriptionget_audit_countget_audit_csv_reportget_audit_recordget_audit_reportget_docid_readsget_event_subscriptionget_event_subscription_schemaget_journal_citationget_packageid_readsget_provenance_metadataget_recent_uploadsis_authorizedlist_active_reservationslist_data_descendantslist_data_entitieslist_data_package_citationslist_data_package_identifierslist_data_package_revisionslist_data_package_scopeslist_data_sourceslist_deleted_data_packageslist_principal_owner_citationslist_recent_changeslist_recent_uploadslist_reservation_identifierslist_service_methodslist_user_data_packageslist_working_onloginlogoutquery_event_subscriptionsread_data_entityread_data_entity_checksumread_data_entity_nameread_data_entity_namesread_data_entity_resource_metadataread_data_entity_sizeread_data_entity_sizesread_data_packageread_data_package_archiveread_data_package_citationread_data_package_doiread_data_package_errorread_data_package_from_doiread_data_package_reportread_data_package_report_checksumread_data_package_report_resource_metadataread_data_package_report_summaryread_data_package_resource_metadataread_evaluate_reportread_evaluate_report_summaryread_metadataread_metadata_checksumread_metadata_dublin_coreread_metadata_entityread_metadata_formatread_metadata_resource_metadatasearch_data_packagesupdate_data_package

Dependencies:askpassclicurlhttrjsonlitemimeopensslR6rlangsysxml2

Evaluate and Upload Data

Rendered fromevaluate_and_upload.Rmdusingknitr::rmarkdownon Jan 12 2026.

Last update: 2026-01-06
Started: 2022-01-11

Retrieve Citation Metrics

Rendered fromretrieve_citations.Rmdusingknitr::rmarkdownon Jan 12 2026.

Last update: 2022-05-24
Started: 2022-01-11

Retrieve Download Metrics

Rendered fromretrieve_downloads.Rmdusingknitr::rmarkdownon Jan 12 2026.

Last update: 2022-05-24
Started: 2022-01-11

Search and Access Data

Rendered fromsearch_and_access.Rmdusingknitr::rmarkdownon Jan 12 2026.

Last update: 2023-10-09
Started: 2022-01-11

Tests Requiring Authentication

Rendered fromtests_requiring_authentication.Rmdusingknitr::rmarkdownon Jan 12 2026.

Last update: 2026-01-08
Started: 2022-01-11

Readme and manuals

Help Manual

Help pageTopics
Check data package creation statuscheck_status_create
Check status of data package evaluationcheck_status_evaluate
Check data package update statuscheck_status_update
Create data packagecreate_data_package
Create data package archive (zip)create_data_package_archive
Create a users distinguished name (defunct)create_dn
Create event subscriptioncreate_event_subscription
Create journal citationcreate_journal_citation
Create reservationcreate_reservation
Delete event subscriptiondelete_event_subscription
Delete journal citationdelete_journal_citation
Delete reservationdelete_reservation
Evaluate data packageevaluate_data_package
Execute event subscriptionexecute_event_subscription
Get audit countget_audit_count
Get audit csv reportget_audit_csv_report
Get audit recordget_audit_record
Get audit report (deprecated)get_audit_report
Get doc ID readsget_docid_reads
Get event subscriptionget_event_subscription
Get event subscription schemaget_event_subscription_schema
Get journal citationget_journal_citation
Get package ID readsget_packageid_reads
Get provenance metadataget_provenance_metadata
Get recent uploadsget_recent_uploads
Is authorized to readis_authorized
List active reservationslist_active_reservations
List data descendantslist_data_descendants
List data entitieslist_data_entities
List data package citationslist_data_package_citations
List data package identifierslist_data_package_identifiers
List data package revisionslist_data_package_revisions
List data package scopeslist_data_package_scopes
List data sourceslist_data_sources
List deleted data packageslist_deleted_data_packages
List principal owner citationslist_principal_owner_citations
List recent changeslist_recent_changes
List recent uploadslist_recent_uploads
List reservation identifierslist_reservation_identifiers
List service methodslist_service_methods
List user data packageslist_user_data_packages
List working onlist_working_on
Login to the EDI repositorylogin
Logout of the EDI repositorylogout
Query event subscriptionsquery_event_subscriptions
Read data entityread_data_entity
Read data entity checksumread_data_entity_checksum
Read data entity nameread_data_entity_name
Read data entity namesread_data_entity_names
Read data entity resource metadataread_data_entity_resource_metadata
Read data entity sizeread_data_entity_size
Read data entity sizesread_data_entity_sizes
Read data packageread_data_package
Read data package archiveread_data_package_archive
Read data package citationread_data_package_citation
Read data package Digital Object Identifierread_data_package_doi
Read data package errorread_data_package_error
Read data package from Digital Object Identifierread_data_package_from_doi
Read data package reportread_data_package_report
Read data package report checksumread_data_package_report_checksum
Read data package report resource metadataread_data_package_report_resource_metadata
Summarize the data package quality reportread_data_package_report_summary
Read data package resource metadataread_data_package_resource_metadata
Read evaluate reportread_evaluate_report
Summarize the evaluate quality reportread_evaluate_report_summary
Read metadataread_metadata
Read metadata checksumread_metadata_checksum
Read metadata Dublin Coreread_metadata_dublin_core
Read data entity metadataread_metadata_entity
Read metadata formatread_metadata_format
Read metadata resource metadataread_metadata_resource_metadata
Search data packagessearch_data_packages
Update data packageupdate_data_package