Package: MtreeRing 1.4.5

Jingning Shi

MtreeRing: A Shiny Application for Automatic Measurements of Tree-Ring Widths on Digital Images

Use morphological image processing and edge detection algorithms to automatically measure tree ring widths on digital images. Users can also manually mark tree rings on species with complex anatomical structures. The arcs of inner-rings and angles of successive inclined ring boundaries are used to correct ring-width series. The package provides a Shiny-based application, allowing R beginners to easily analyze tree ring images and export ring-width series in standard file formats.

Authors:Jingning Shi [aut, cre], Wei Xiang [aut]

MtreeRing_1.4.5.tar.gz
MtreeRing_1.4.5.zip(r-4.7-any)MtreeRing_1.4.5.zip(r-4.6-any)MtreeRing_1.4.5.zip(r-4.5-any)
MtreeRing_1.4.5.tgz(r-4.6-any)MtreeRing_1.4.5.tgz(r-4.5-any)
MtreeRing_1.4.5.tar.gz(r-4.7-any)MtreeRing_1.4.5.tar.gz(r-4.6-any)
MtreeRing_1.4.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MtreeRing/json (API)

# Install 'MtreeRing' in R:

install.packages('MtreeRing', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #287

Bug tracker:https://github.com/ropensci/mtreering/issues

Pkgdown/docs site:https://docs.ropensci.org

On CRAN:

dendrochronology forest forestry shiny-apps shinyapp tree-ring-width tree-rings

3.57 score 37 stars 28 downloads 6 exports 81 dependencies

Last updated from:c3f44754ff (on master). Checks:2 ERROR, 3 OK, 5 NOTE. Indexed: yes.

Target	Result	Time
linux-devel	ERROR	264
pkgdown docs	OK	160
source / vignettes	OK	239
linux-release	NOTE	184
macos-release	NOTE	159
macos-oldrel	NOTE	158
windows-devel	ERROR	221
windows-release	NOTE	164
windows-oldrel	NOTE	142
wasm-release	OK	147

Exports:pith_measure ring_app_launch ring_calculate ring_detect ring_modify ring_read

Dependencies:base64enc bmp boot bslib cachem cli commonmark cpp11 curl deldir digest downloader dplR dplyr fastmap fontawesome fs generics glue htmltools httpuv igraph imager jpeg jquerylib jsonlite later lattice lifecycle lme4 magick magrittr MASS Matrix matrixStats measuRing memoise mime minqa nlme nloptr otel pastecs pillar pkgconfig png polyclip promises purrr R.methodsS3 R.oo R.utils R6 rappdirs rbibutils Rcpp RcppEigen Rdpack readbitmap reformulas rlang sass shiny shinydashboard shinyWidgets signal sourcetools spatstat.data spatstat.geom spatstat.univar spatstat.utils stringi stringr tibble tidyselect tiff utf8 vctrs withr XML xtable

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A Shiny Application for Automatic Measurements of Tree-Ring Widths on Digital Images	MtreeRing-package MtreeRing
Calibrate ring-width series	pith_measure
Run Shiny-based Application	ring_app_launch
Generate a ring-width series	ring_calculate
Automatic detection of tree-ring borders	ring_detect
Edit ring borders visually	ring_modify
Read and plot a tree-ring image file	ring_read