Package: ReLTER 3.0.0


Alessandro Oggioni
ReLTER: An Interface for the eLTER Community
ReLTER provides access to DEIMS-SDR (https://deims.org/), and allows interaction with data and software implemented by eLTER Research Infrastructure (RI) thus improving data sharing among European LTER projects. ReLTER uses the R language to access and interact with the DEIMS-SDR archive of information shared by the Long Term Ecological Research (LTER) network. This package grew within eLTER H2020 as a major project that will help advance the development of European Long-Term Ecosystem Research Infrastructures (eLTER RI - https://elter-ri.eu). The ReLTER package functions in particular allow to: - retrieve the information about entities (e.g. sites, datasets, and activities) shared by DEIMS-SDR (see e.g. get_site_info function); - interact with the ODSEurope (maps.opendatascience.eu) starting with the dataset shared by DEIMS-SDR (https://deims.org/) (see e.g. the get_site_ODS() function); - use the eLTER site informations to download and crop geospatial data from other platforms (see e.g. get_site_ODS function()); - improve the quality of the dataset (see e.g. get_id_worms()). Functions currently implemented are derived from discussions of the needs among the eLTER users community. The ReLTER package will continue to follow the progress of eLTER-RI and evolve, adding new tools and improvements as required.
Authors:
ReLTER_3.0.0.tar.gz
ReLTER_3.0.0.zip(r-4.6)ReLTER_3.0.0.zip(r-4.5)ReLTER_3.0.0.zip(r-4.4)
ReLTER_3.0.0.tgz(r-4.5-any)ReLTER_3.0.0.tgz(r-4.4-any)
ReLTER_3.0.0.tar.gz(r-4.6-any)ReLTER_3.0.0.tar.gz(r-4.5-any)
ReLTER_3.0.0.tgz(r-4.5-emscripten)
ReLTER.pdf |ReLTER.html✨
ReLTER/json (API)
NEWS
# Install 'ReLTER' in R: |
install.packages('ReLTER', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/relter/issues
Pkgdown/docs site:https://docs.ropensci.org
- eLTER_data_reporting_format - ELTER Data Reporting Format
biodiversity-informaticsdata-scienceecologyelterresearch-infrastructure
Last updated from:a6675fd79a (on main). Checks:2 NOTE, 3 OK, 5 ERROR. Indexed: yes.
Target | Result | Total time | Artifact |
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linux-devel-x86_64 | NOTE | 341 | |
pkgdown docs | OK | 396 | |
source / vignettes | OK | 387 | |
linux-release-x86_64 | NOTE | 353 | |
macos-release-arm64 | ERROR | 203 | |
macos-oldrel-arm64 | ERROR | 205 | |
windows-devel | ERROR | 307 | |
windows-release | ERROR | 346 | |
windows-oldrel | ERROR | 394 | |
wasm-release | OK | 220 |
Exports:%>%get_activity_infoget_dataset_infoget_deims_API_versionget_deims_base_urlget_location_infoget_network_sitesget_sensor_infoget_site_EcoDataCubeget_site_infoget_site_speciesOccurrencesget_sites_interactiveget_sites_within_3d_bounding_boxget_sites_within_radiusget_zenodo_datamap_occ_gbif2eltermap_occ_inat2eltermap_occ_obis2elterpackage_settingsproduce_network_points_mapproduce_site_mapproduce_site_observedProperties_pieproduce_site_observedProperties_waffleproduce_site_qrcodereporting_produce_data_object_v1.3reporting_produce_data_object_v2.0reporting_save_archivesave_occ_eLTER_reporting_Archiveset_deims_base_urltaxon_id_pesitaxon_id_worms
Dependencies:abindaskpassassertthatbase64encbslibcachemclassclassIntclicpp11crayoncrosstalkcurldata.tableDBIdigestdplyrdtplyre1071evaluatefarverfastmapfontawesomefsgenericsgeojsonsfgeometriesggforceggplot2ggspatialgluegtablehighrhmshtmltoolshtmlwidgetshttr2isobandjpegjqrjquerylibjsonifyjsonliteKernSmoothknitrlabelinglatticelazyevalleafletleaflet.providerslifecyclelubridatemagrittrMASSmemoisemimeopensslpillarpkgconfigpngpolyclipprettyunitsprogressproxypurrrqrcodeR6rapidjsonrrappdirsrasterRColorBrewerRcpprlangrmarkdownrosms2S7sassscalessfsfheadersspstringistringrsyssystemfontsterratibbletidyrtidyselecttimechangetinytextweenrunitsutf8vctrsviridisLitewithrwkxfunxml2yaml
How to retrieve occurrence records by exploiting the {ReLTER} get_site_speciesOccurrences() function
Rendered fromoccurrences_into_site.Rmd
usingknitr::knitr
on Sep 21 2025.Last update: 2025-08-22
Started: 2022-12-22
Obtain information about one LTER Site using the DEIMS ID
Rendered fromsingle_site_information.Rmd
usingknitr::knitr
on Sep 21 2025.Last update: 2025-08-22
Started: 2025-08-22
Obtain list of contacts from several DEIMS ID's (in csv file)
Rendered frommulti_sites_contacts.Rmd
usingknitr::knitr
on Sep 21 2025.Last update: 2025-08-22
Started: 2025-08-22
Obtaining information about many LTER Sites
Rendered frommulti_sites_information.Rmd
usingknitr::knitr
on Sep 21 2025.Last update: 2025-08-22
Started: 2025-08-22
Run ReLTER in a Docker container
Rendered fromrocker_ReLTER.Rmd
usingknitr::knitr
on Sep 21 2025.Last update: 2025-08-22
Started: 2022-04-15