Package: babette 2.3.4
babette: Control 'BEAST2'
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'. 'babette' provides for an alternative workflow of using all these tools separately. This allows doing complex Bayesian phylogenetics easily and reproducibly from 'R'.
Authors:
babette_2.3.4.tar.gz
babette_2.3.4.zip(r-4.5)babette_2.3.4.zip(r-4.4)babette_2.3.4.zip(r-4.3)
babette_2.3.4.tgz(r-4.4-any)babette_2.3.4.tgz(r-4.3-any)
babette_2.3.4.tar.gz(r-4.5-noble)babette_2.3.4.tar.gz(r-4.4-noble)
babette_2.3.4.tgz(r-4.4-emscripten)babette_2.3.4.tgz(r-4.3-emscripten)
babette.pdf |babette.html✨
babette/json (API)
NEWS
# Install 'babette' in R: |
install.packages('babette', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/babette/issues
bayesian-inferencebeast2phylogenetics
Last updated 4 months agofrom:2150931d20 (on master). Checks:OK: 6 ERROR: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 25 2024 |
R-4.5-win | OK | Sep 25 2024 |
R-4.5-linux | ERROR | Sep 25 2024 |
R-4.4-win | OK | Sep 25 2024 |
R-4.4-mac | OK | Sep 25 2024 |
R-4.3-win | OK | Sep 25 2024 |
R-4.3-mac | OK | Sep 25 2024 |
Exports:bbt_continuebbt_delete_temp_filesbbt_runbbt_run_from_modelbbt_self_testcheck_beast2_pkgscreate_test_bbt_run_outputcreate_test_ns_outputget_alignment_ids_from_xmlget_babette_pathget_babette_pathsparse_beast2_outputparse_beast2_output_to_nsplot_densitreeprepare_file_creationupdate_babette
Dependencies:ade4apebeastierbeautierbitbit64clicliprcpp11crayondigestfansifastmatchgenericsgluehmsigraphjsonlitelatticelifecyclemagrittrMASSMatrixmauricernlmephangornpillarpixmappkgconfigprettyunitsprogresspurrrquadprogR6rappdirsRcppRcppArmadilloreadrrJavarlangsegmentedseqinrsessioninfospstringistringrtestittibbletidyselecttracerertzdbutf8vctrsvroomwithrxml2
babette demo
Rendered fromdemo.Rmd
usingknitr::rmarkdown
on Sep 25 2024.Last update: 2022-06-20
Started: 2018-01-30
babette Tutorial
Rendered fromtutorial.Rmd
usingknitr::rmarkdown
on Sep 25 2024.Last update: 2023-12-27
Started: 2018-07-07
babette: Step by Step
Rendered fromstep_by_step.Rmd
usingknitr::rmarkdown
on Sep 25 2024.Last update: 2023-12-27
Started: 2018-05-07
Examples
Rendered fromexamples.Rmd
usingknitr::rmarkdown
on Sep 25 2024.Last update: 2022-06-20
Started: 2018-02-07
Nested Sampling
Rendered fromnested_sampling.Rmd
usingknitr::rmarkdown
on Sep 25 2024.Last update: 2023-12-27
Started: 2018-09-12