Package: bold 1.3.0

Salix Dubois

bold: Interface to Bold Systems API

A programmatic interface to the Web Service methods provided by Bold Systems (<http://www.boldsystems.org/>) for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.

Authors:Salix Dubois [aut, cre], Scott Chamberlain [aut]

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bold/json (API)
NEWS

# Install 'bold' in R:
install.packages('bold', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/bold/issues

Datasets:
  • sequences - List of 3 nucleotide sequences to use in examples for the 'bold_identify' function

On CRAN:

biodiversitybarcodednasequencesfastaapi-wrapperbarcodestaxize

18 exports 17 stars 7.86 score 14 dependencies 10 dependents 9 mentions 53 scripts 621 downloads

Last updated 4 months agofrom:404fd118d8 (on master). Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 24 2024
R-4.5-winOKSep 24 2024
R-4.5-linuxOKSep 24 2024
R-4.4-winOKSep 24 2024
R-4.4-macOKSep 24 2024
R-4.3-winOKSep 24 2024
R-4.3-macOKSep 24 2024

Exports:b_sepFastabold_filterbold_get_attrbold_get_errorsbold_get_paramsbold_identifybold_identify_parentsbold_identify_taxonomybold_read_tracebold_seqbold_seqspecbold_specimensbold_statsbold_tax_idbold_tax_id2bold_tax_namebold_traceread_trace

Dependencies:clicrulcurldata.tablehttpcodejsonlitemimeR6Rcpprlangstringitriebeardurltoolsxml2