Package: bold 1.3.0

Salix Dubois

bold: Interface to Bold Systems API

A programmatic interface to the Web Service methods provided by Bold Systems (<http://www.boldsystems.org/>) for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.

Authors:Salix Dubois [aut, cre], Scott Chamberlain [aut]

bold_1.3.0.tar.gz
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bold_1.3.0.tgz(r-4.6-any)bold_1.3.0.tgz(r-4.5-any)
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bold_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bold/json (API)

# Install 'bold' in R:
install.packages('bold', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/bold/issues

Pkgdown/docs site:https://docs.ropensci.org

Datasets:
  • sequences - List of 3 nucleotide sequences to use in examples for the 'bold_identify' function

On CRAN:

Conda:

biodiversitybarcodednasequencesfastaapi-wrapperbarcodestaxize

6.06 score 21 stars 1 packages 67 scripts 122 downloads 9 mentions 18 exports 15 dependencies

Last updated from:8bfd90ace5 (on master). Checks:7 ERROR, 3 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develERROR165
pkgdown docsOK295
source / vignettesOK241
linux-releaseERROR173
macos-releaseERROR155
macos-oldrelERROR113
windows-develERROR73
windows-releaseERROR91
windows-oldrelERROR89
wasm-releaseOK141

Exports:b_sepFastabold_filterbold_get_attrbold_get_errorsbold_get_paramsbold_identifybold_identify_parentsbold_identify_taxonomybold_read_tracebold_seqbold_seqspecbold_specimensbold_statsbold_tax_idbold_tax_id2bold_tax_namebold_traceread_trace

Dependencies:clicrulcurldata.tablehttpcodejsonlitelifecyclemimeR6Rcpprlangstringitriebeardurltoolsxml2