Package: bold 1.3.0

Salix Dubois

bold: Interface to Bold Systems API

A programmatic interface to the Web Service methods provided by Bold Systems (<http://www.boldsystems.org/>) for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.

Authors:Salix Dubois [aut, cre], Scott Chamberlain [aut]

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bold.pdf |bold.html✨
bold/json (API)
NEWS

# Install 'bold' in R:
install.packages('bold', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/bold/issues

Pkgdown site:https://docs.ropensci.org

Datasets:
  • sequences - List of 3 nucleotide sequences to use in examples for the 'bold_identify' function

On CRAN:

Conda:

biodiversitybarcodednasequencesfastaapi-wrapperbarcodestaxize

5.81 score 20 stars 60 scripts 238 downloads 9 mentions 18 exports 14 dependencies

Last updated 5 months agofrom:8bfd90ace5 (on master). Checks:11 OK. Indexed: yes.

TargetResultTotal time
pkgdown docsOK158
source / vignettesOK167
linux-develOK138
linux-releaseOK146
macos-release-arm64OK116
macos-oldrel-arm64OK96
windows-develOK100
windows-releaseOK90
windows-oldrelOK97
wasm-releaseOK235
wasm-oldrelOK299

Exports:b_sepFastabold_filterbold_get_attrbold_get_errorsbold_get_paramsbold_identifybold_identify_parentsbold_identify_taxonomybold_read_tracebold_seqbold_seqspecbold_specimensbold_statsbold_tax_idbold_tax_id2bold_tax_namebold_traceread_trace

Dependencies:clicrulcurldata.tablehttpcodejsonlitemimeR6Rcpprlangstringitriebeardurltoolsxml2