Package: bowerbird 0.19.3

Ben Raymond

bowerbird: Keep a Collection of Sparkly Data Resources

Tools to get and maintain a data repository from third-party data providers.

Authors:Ben Raymond [aut, cre], Michael Sumner [aut], Miles McBain [rev, ctb], Leah Wasser [rev, ctb]

bowerbird_0.19.3.tar.gz
bowerbird_0.19.3.zip(r-4.7-any)bowerbird_0.19.3.zip(r-4.6-any)bowerbird_0.19.3.zip(r-4.5-any)
bowerbird_0.19.3.tgz(r-4.6-any)bowerbird_0.19.3.tgz(r-4.5-any)
bowerbird_0.19.3.tar.gz(r-4.7-any)bowerbird_0.19.3.tar.gz(r-4.6-any)
bowerbird_0.19.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bowerbird/json (API)

# Install 'bowerbird' in R:
install.packages('bowerbird', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #139

Bug tracker:https://github.com/ropensci/bowerbird/issues

Pkgdown/docs site:https://docs.ropensci.org

On CRAN:

Conda:

ropensciantarcticsouthern oceandataenvironmentalsatelliteclimatepeer-reviewed

7.31 score 52 stars 1 packages 20 scripts 43 exports 94 dependencies

Last updated from:0e32a74188 (on master). Checks:7 ERROR, 3 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develERROR250
pkgdown docsOK245
source / vignettesOK238
linux-releaseERROR147
macos-releaseERROR101
macos-oldrelERROR88
windows-develERROR58
windows-releaseERROR76
windows-oldrelERROR69
wasm-releaseOK201

Exports:%>%bb_aadc_datasource_metabb_aadc_sourcebb_addbb_add_snapshotbb_bunzip2bb_cleanupbb_configbb_copernicus_cleanupbb_data_source_dirbb_data_sourcesbb_data_sources<-bb_decompressbb_example_sourcesbb_find_wgetbb_fingerprintbb_getbb_gunzipbb_handler_aws_s3bb_handler_copernicusbb_handler_earthdatabb_handler_earthdata_stacbb_handler_oceandatabb_handler_rgetbb_handler_threddsbb_handler_wgetbb_inflatebb_install_wgetbb_modify_sourcebb_oceandata_cleanupbb_rgetbb_rget_default_downloadsbb_settingsbb_settings<-bb_sourcebb_source_us_buildingsbb_subsetbb_summarybb_syncbb_uncompressbb_untarbb_unzipbb_zenodo_source

Dependencies:abindarchiveaskpassassertthataws.s3aws.signaturebase64encbslibcachemclassclassIntcliCopernicusMarinecpp11crayoncrosstalkcurlDBIdigestdplyre1071evaluatefarverfastmapfontawesomefsgenericsgluehighrhtmltoolshtmlwidgetshttrhttr2jpegjquerylibjsonliteKernSmoothknitrlabelinglatticelazyevalleafletleaflet.providerslifecyclelubridatemagrittrMASSmemoisemimeopensslpaws.commonpaws.storagepillarpkgconfigpngproxypurrrR.methodsS3R.ooR.utilsR6rappdirsrasterRColorBrewerRcpprlangrmarkdownrstacrvests2sassscalesselectrsfspstarsstringistringrsysterratibbletidyrtidyselecttimechangetinytexunitsutf8vctrsviridisLitewithrwkxfunxml2yaml

Bowerbird
Table of contents | Overview | Installing | Usage overview | Configuration | Users: level of usage and expected knowledge | Defining data sources | Prepackaged data source definitions | Defining your own data sources | Example 1: a single data file | Example 2: multiple files via recursive download | Example 3: an Earthdata source | Example 4: an Oceandata source | Nuances | Recursive download | Other tips and tricks, including resolving recursive download issues | Choosing a data directory | Synchronizing to object storage | Post-processing | Decompressing files | Deleting unwanted files | Modifying data sources | Authentication | Reducing download sizes | Parallelized sync | Data provenance and reproducible research | Developer notes | Writing new data source handlers | Data source summary
Rendered frombowerbird.Rmdusingknitr::rmarkdown

Last update: 2024-08-05
Started: 2017-07-27

Data provenance
Which files were used in an analysis | Refining the list of files | The provenance of files used in an analysis | A word on digital object identifiers
Rendered fromdata_provenance.Rmdusingknitr::rmarkdown

Last update: 2018-07-11
Started: 2017-07-20

Readme and manuals

Help Manual

Help pageTopics
Generate a bowerbird data source object for an Australian Antarctic Data Centre data setbb_aadc_datasource_meta bb_aadc_source
Add new data sources to a bowerbird configurationbb_add
Add a snapshot to a sourcebb_add_snapshot
Postprocessing: remove unwanted filesbb_cleanup
Initialize a bowerbird configurationbb_config
Postprocessing: remove redundant Copernicus filesbb_copernicus_cleanup
Return the local directory of each data source in a configurationbb_data_source_dir
Gets or sets a bowerbird configuration object's data sourcesbb_data_sources bb_data_sources<-
Postprocessing: decompress zip, gz, bz2, tar, Z files and optionally delete the compressed copybb_bunzip2 bb_decompress bb_gunzip bb_inflate bb_uncompress bb_untar bb_unzip
Example bowerbird data sourcesbb_example_sources
Find the wget executablebb_find_wget
Fingerprint the files associated with a data sourcebb_fingerprint
Convenience function to define and synchronize a bowerbird data collectionbb_get
Handler for public AWS S3 data sourcesbb_handler_aws_s3
Handler for Copernicus Marine datasetsbb_handler_copernicus
Handler for data sets from Earthdata providersbb_handler_earthdata
Handler for data sets from Earthdata providers, using the STAC catalogue to do the initial searchbb_handler_earthdata_stac
Handler for Oceandata data setsbb_handler_oceandata
Mirror an external data source using bowerbird's bb_rget utilitybb_handler_rget
Mirror an external thredds data source using bowerbird's bb_rget utilitybb_handler_thredds
Mirror an external data source using the wget utilitybb_handler_wget
Install wgetbb_install_wget
Modify a data sourcebb_modify_source
Postprocessing: remove redundant NRT oceandata filesbb_oceandata_cleanup
A recursive download utilitybb_rget bb_rget_default_downloads
Gets or sets a bowerbird configuration object's settingsbb_settings bb_settings<-
Define a data sourcebb_source
Example bowerbird data source: Microsoft US Buildingsbb_source_us_buildings
Keep only selected data_sources in a bowerbird configurationbb_subset
Produce a summary of a bowerbird configurationbb_summary
Run a bowerbird data repository synchronizationbb_sync
Make a wget callbb_wget
Generate a bowerbird data source object for a Zenodo data setbb_zenodo_source
'bowerbird'bowerbird-package bowerbird