Package: colocr 0.1.1
colocr: Conduct Co-Localization Analysis of Fluorescence Microscopy Images
Automate the co-localization analysis of fluorescence microscopy images. Selecting regions of interest, extract pixel intensities from the image channels and calculate different co-localization statistics. The methods implemented in this package are based on Dunn et al. (2011) <doi:10.1152/ajpcell.00462.2010>.
Authors:
colocr_0.1.1.tar.gz
colocr_0.1.1.zip(r-4.5)colocr_0.1.1.zip(r-4.4)colocr_0.1.1.zip(r-4.3)
colocr_0.1.1.tgz(r-4.4-any)colocr_0.1.1.tgz(r-4.3-any)
colocr_0.1.1.tar.gz(r-4.5-noble)colocr_0.1.1.tar.gz(r-4.4-noble)
colocr_0.1.1.tgz(r-4.4-emscripten)colocr_0.1.1.tgz(r-4.3-emscripten)
colocr.pdf |colocr.html✨
colocr/json (API)
NEWS
# Install 'colocr' in R: |
install.packages('colocr', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/colocr/issues
Last updated 5 years agofrom:9b7bd6ef54 (on master). Checks:OK: 5 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 28 2024 |
R-4.5-win | NOTE | Sep 28 2024 |
R-4.5-linux | NOTE | Sep 28 2024 |
R-4.4-win | OK | Sep 28 2024 |
R-4.4-mac | OK | Sep 28 2024 |
R-4.3-win | OK | Sep 28 2024 |
R-4.3-mac | OK | Sep 28 2024 |
Exports:.intensity_get.labels_add.manders.pearson%>%colocr_appimage_loadroi_checkroi_selectroi_showroi_test
Dependencies:base64encbmpbslibcachemclicolorspacecommonmarkcpp11crayoncurldigestdownloaderfarverfastmapfontawesomefsgluehtmltoolshttpuvigraphimagerjpegjquerylibjsonlitelabelinglaterlatticelifecyclemagickmagrittrMatrixmemoisemimemunsellpkgconfigpngpromisespurrrR6rappdirsRColorBrewerRcppreadbitmaprlangsassscalesshinysourcetoolsstringistringrtiffvctrsviridisLitewithrxtable
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Get pixel intensities | .intensity_get |
Label regions of interest | .labels_add |
Calculate Marnders Overlap Coefficient | .manders |
Calculate Pearson's Correlation Coefficient | .pearson |
'colocr': Conduct Co-localization Analysis of Microscopy Images. | colocr-package colocr |
Run the shiny App | colocr_app |
Load images from files | image_load |
Show pixel intensities | roi_check |
Select regions of interest | roi_select |
Show the selected regions of interest | roi_show |
Test Co-localization | roi_test |