Package: forcis 1.0.1

Nicolas Casajus

forcis: Handle the FORCIS Foraminifera Database

Provides an interface to the 'FORCIS' database (Chaabane et al. (2024) <doi:10.5281/zenodo.7390791>) on global foraminifera distribution. This package allows to download and to handle 'FORCIS' data. It is part of the FRB-CESAB working group FORCIS. <https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/forcis/>.

Authors:Nicolas Casajus [aut, cre, cph], Mattia Greco [aut], Sonia Chaabane [aut], Xavier Giraud [aut], Thibault de Garidel-Thoron [aut], Khalil Hammami [ctb], Air Forbes [rev], FRB-CESAB [fnd]

forcis_1.0.1.tar.gz
forcis_1.0.1.zip(r-4.6)forcis_1.0.1.zip(r-4.5)forcis_1.0.1.zip(r-4.4)
forcis_1.0.1.tgz(r-4.5-any)forcis_1.0.1.tgz(r-4.4-any)
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forcis_1.0.1.tgz(r-4.4-emscripten)
forcis.pdf |forcis.html✨
forcis/json (API)

# Install 'forcis' in R:
install.packages('forcis', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #660

Bug tracker:https://github.com/ropensci/forcis/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

5.86 score 5 stars 9 scripts 30 exports 59 dependencies

Last updated 12 days agofrom:ead7046dde (on main). Checks:10 OK. Indexed: yes.

TargetResultTotal time
source / vignettesOK578
pkgdown docsOK531
linux-devel-x86_64OK169
linux-release-x86_64OK532
macos-release-arm64OK112
macos-oldrel-arm64OK155
windows-develOK119
windows-releaseOK116
windows-oldrelOK529
wasm-releaseOK654

Exports:compute_abundancescompute_concentrationscompute_frequenciesconvert_to_long_formatdata_to_sfdownload_forcis_dbfilter_by_bboxfilter_by_monthfilter_by_oceanfilter_by_polygonfilter_by_speciesfilter_by_yeargeom_basemapget_available_versionsget_ocean_namesget_required_columnsget_species_namesget_version_metadataggmap_dataplot_record_by_depthplot_record_by_monthplot_record_by_seasonplot_record_by_yearread_cpr_north_dataread_cpr_south_dataread_plankton_nets_dataread_pump_dataread_sediment_trap_dataselect_forcis_columnsselect_taxonomy

Dependencies:askpassbitbit64classclassIntclicpp11crayoncurlDBIdplyre1071fansifarvergenericsggplot2gluegtablehmshttr2isobandKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvnlmeopensslpillarpkgconfigprettyunitsprogressproxypurrrR6rappdirsRColorBrewerRcpprlangs2scalessfstringistringrsystibbletidyrtidyselecttzdbunitsutf8vctrsviridisLitevroomwithrwk

Data conversion

Rendered fromdata-conversion.Rmdusingknitr::rmarkdownon May 20 2025.

Last update: 2025-05-14
Started: 2024-02-12

Data visualization

Rendered fromdata-visualization.Rmdusingknitr::rmarkdownon May 20 2025.

Last update: 2025-05-14
Started: 2024-02-12

Database versions

Rendered fromdatabase-versions.Rmdusingknitr::rmarkdownon May 20 2025.

Last update: 2025-04-23
Started: 2024-02-12

Get started

Rendered fromforcis.Rmdusingknitr::rmarkdownon May 20 2025.

Last update: 2025-05-14
Started: 2021-11-16

Sampling devices

Rendered fromsampling-devices.Rmdusingknitr::rmarkdownon May 20 2025.

Last update: 2025-04-24
Started: 2024-04-23

Select, reshape, and filter data

Rendered fromselect-and-filter-data.Rmdusingknitr::rmarkdownon May 20 2025.

Last update: 2025-05-14
Started: 2024-02-23

Readme and manuals

Help Manual

Help pageTopics
Compute count conversionscomputations compute_abundances compute_concentrations compute_frequencies
Reshape and simplify FORCIS dataconvert_to_long_format
Convert a data frame into an sf objectdata_to_sf
Download the FORCIS databasedownload_forcis_db
Filter FORCIS data by a spatial bounding boxfilter_by_bbox
Filter FORCIS data by month of samplingfilter_by_month
Filter FORCIS data by oceanfilter_by_ocean
Filter FORCIS data by a spatial polygonfilter_by_polygon
Filter FORCIS data by speciesfilter_by_species
Filter FORCIS data by year of samplingfilter_by_year
Add a World basemap to a ggplot objectgeom_basemap
Get available versions of the FORCIS databaseget_available_versions
Get World ocean namesget_ocean_names
Get required column namesget_required_columns
Get species names from column namesget_species_names
Print information of a specific version of the FORCIS databaseget_version_metadata
Map the spatial distribution of FORCIS dataggmap_data
Plot sample records by depth of collectionplot_record_by_depth
Plot sample records by monthplot_record_by_month
Plot sample records by seasonplot_record_by_season
Plot sample records by yearplot_record_by_year
Read FORCIS dataread_cpr_north_data read_cpr_south_data read_data read_plankton_nets_data read_pump_data read_sediment_trap_data
Select columns in FORCIS dataselect_forcis_columns
Select a taxonomy in FORCIS dataselect_taxonomy