Package: gbifdb 1.0.0

Carl Boettiger

gbifdb: High Performance Interface to 'GBIF'

A high performance interface to the Global Biodiversity Information Facility, 'GBIF'. In contrast to 'rgbif', which can access small subsets of 'GBIF' data through web-based queries to a central server, 'gbifdb' provides enhanced performance for R users performing large-scale analyses on servers and cloud computing providers, providing full support for arbitrary 'SQL' or 'dplyr' operations on the complete 'GBIF' data tables (now over 1 billion records, and over a terabyte in size). 'gbifdb' accesses a copy of the 'GBIF' data in 'parquet' format, which is already readily available in commercial computing clouds such as the Amazon Open Data portal and the Microsoft Planetary Computer, or can be accessed directly without downloading, or downloaded to any server with suitable bandwidth and storage space. The high-performance techniques for local and remote access are described in <https://duckdb.org/why_duckdb> and <https://arrow.apache.org/docs/r/articles/fs.html> respectively.

Authors:Carl Boettiger [aut, cre]

gbifdb_1.0.0.tar.gz
gbifdb_1.0.0.zip(r-4.6)gbifdb_1.0.0.zip(r-4.5)gbifdb_1.0.0.zip(r-4.4)
gbifdb_1.0.0.tgz(r-4.5-any)gbifdb_1.0.0.tgz(r-4.4-any)
gbifdb_1.0.0.tar.gz(r-4.6-any)gbifdb_1.0.0.tar.gz(r-4.5-any)
gbifdb_1.0.0.tgz(r-4.5-emscripten)
gbifdb.pdf |gbifdb.html
gbifdb/json (API)
NEWS

# Install 'gbifdb' in R:
install.packages('gbifdb', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #492

Bug tracker:https://github.com/ropensci/gbifdb/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

5.73 score 37 stars 29 scripts 232 downloads 6 exports 30 dependencies

Last updated from:35b60fded4 (on main). Checks:10 OK. Indexed: yes.

TargetResultTotal timeArtifact
linux-devel-x86_64OK143
pkgdown docsOK168
source / vignettesOK190
linux-release-x86_64OK146
macos-release-arm64OK70
macos-oldrel-arm64OK90
windows-develOK80
windows-releaseOK76
windows-oldrelOK78
wasm-releaseOK119

Exports:gbif_dirgbif_downloadgbif_example_datagbif_localgbif_remotegbif_version

Dependencies:arrowassertthatbitbit64blobclicpp11DBIdbplyrdplyrduckdbduckdbfsfsgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr

Intro to gbifdb

Rendered fromintro.Rmdusingknitr::rmarkdownon Aug 27 2025.

Last update: 2021-11-30
Started: 2021-11-08