Package: gbifdb 1.0.0.99

Carl Boettiger

gbifdb: High Performance Interface to 'GBIF'

A high performance interface to the Global Biodiversity Information Facility, 'GBIF'. In contrast to 'rgbif', which can access small subsets of 'GBIF' data through web-based queries to a central server, 'gbifdb' provides enhanced performance for R users performing large-scale analyses on servers and cloud computing providers, providing full support for arbitrary 'SQL' or 'dplyr' operations on the complete 'GBIF' data tables (now over 1 billion records, and over a terabyte in size). 'gbifdb' accesses a copy of the 'GBIF' data in 'parquet' format, which is already readily available in commercial computing clouds such as the Amazon Open Data portal and the Microsoft Planetary Computer, or can be accessed directly without downloading, or downloaded to any server with suitable bandwidth and storage space. The high-performance techniques for local and remote access are described in <https://duckdb.org/why_duckdb> and <https://arrow.apache.org/docs/r/articles/fs.html> respectively.

Authors:Carl Boettiger [aut, cre], Marc-Olivier Beausoleil [ctb]

gbifdb_1.0.0.99.tar.gz
gbifdb_1.0.0.99.zip(r-4.6)gbifdb_1.0.0.99.zip(r-4.5)gbifdb_1.0.0.99.zip(r-4.4)
gbifdb_1.0.0.99.tgz(r-4.5-any)gbifdb_1.0.0.99.tgz(r-4.4-any)
gbifdb_1.0.0.99.tar.gz(r-4.6-any)gbifdb_1.0.0.99.tar.gz(r-4.5-any)
gbifdb_1.0.0.99.tgz(r-4.5-emscripten)
gbifdb.pdf |gbifdb.html
gbifdb/json (API)
NEWS

# Install 'gbifdb' in R:
install.packages('gbifdb', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #492

Bug tracker:https://github.com/ropensci/gbifdb/issues

Pkgdown/docs site:https://docs.ropensci.org

On CRAN:

Conda:

6.11 score 40 stars 32 scripts 195 downloads 6 exports 30 dependencies

Last updated from:12490ac39a (on main). Checks:10 OK. Indexed: yes.

TargetResultTotal timeArtifact
linux-devel-x86_64OK131
pkgdown docsOK172
source / vignettesOK230
linux-release-x86_64OK143
macos-release-arm64OK76
macos-oldrel-arm64OK127
windows-develOK71
windows-releaseOK85
windows-oldrelOK77
wasm-releaseOK131

Exports:gbif_dirgbif_downloadgbif_example_datagbif_localgbif_remotegbif_version

Dependencies:arrowassertthatbitbit64blobclicpp11DBIdbplyrdplyrduckdbduckdbfsfsgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr

Intro to gbifdb

Rendered fromintro.Rmdusingknitr::rmarkdownon Dec 13 2025.

Last update: 2021-11-30
Started: 2021-11-08