Package: gbifdb 1.0.0.99

Carl Boettiger

gbifdb: High Performance Interface to 'GBIF'

A high performance interface to the Global Biodiversity Information Facility, 'GBIF'. In contrast to 'rgbif', which can access small subsets of 'GBIF' data through web-based queries to a central server, 'gbifdb' provides enhanced performance for R users performing large-scale analyses on servers and cloud computing providers, providing full support for arbitrary 'SQL' or 'dplyr' operations on the complete 'GBIF' data tables (now over 1 billion records, and over a terabyte in size). 'gbifdb' accesses a copy of the 'GBIF' data in 'parquet' format, which is already readily available in commercial computing clouds such as the Amazon Open Data portal and the Microsoft Planetary Computer, or can be accessed directly without downloading, or downloaded to any server with suitable bandwidth and storage space. The high-performance techniques for local and remote access are described in <https://duckdb.org/why_duckdb> and <https://arrow.apache.org/docs/r/articles/fs.html> respectively.

Authors:Carl Boettiger [aut, cre], Marc-Olivier Beausoleil [ctb]

gbifdb_1.0.0.99.tar.gz
gbifdb_1.0.0.99.zip(r-4.7)gbifdb_1.0.0.99.zip(r-4.6)gbifdb_1.0.0.99.zip(r-4.5)
gbifdb_1.0.0.99.tgz(r-4.6-any)gbifdb_1.0.0.99.tgz(r-4.5-any)
gbifdb_1.0.0.99.tar.gz(r-4.6-any)
gbifdb_1.0.0.99.tgz(r-4.5-emscripten)
gbifdb.pdf |gbifdb.html
gbifdb/json (API)
NEWS

# Install 'gbifdb' in R:
install.packages('gbifdb', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #492

Bug tracker:https://github.com/ropensci/gbifdb/issues

Pkgdown/docs site:https://docs.ropensci.org

On CRAN:

Conda:

6.15 score 40 stars 35 scripts 285 downloads 6 exports 30 dependencies

Last updated from:12490ac39a (on main). Checks:10 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK120
pkgdown docsOK149
source / vignettesOK204
linux-release-x86_64OK150
macos-release-arm64OK104
macos-oldrel-arm64OK84
windows-develOK84
windows-releaseOK74
windows-oldrelOK70
wasm-releaseOK122

Exports:gbif_dirgbif_downloadgbif_example_datagbif_localgbif_remotegbif_version

Dependencies:arrowassertthatbitbit64blobclicpp11DBIdbplyrdplyrduckdbduckdbfsfsgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr

Intro to gbifdb

Rendered fromintro.Rmdusingknitr::rmarkdownon Apr 15 2026.

Last update: 2021-11-30
Started: 2021-11-08