Package: gigs 0.5.1.9000

Simon R Parker

gigs: Assess Fetal, Newborn, and Child Growth with International Standards

Convert between anthropometric measures and z-scores/centiles in multiple growth standards, and classify fetal, newborn, and child growth accordingly. With a simple interface to growth standards from the World Health Organisation and International Fetal and Newborn Growth Consortium for the 21st Century, gigs makes growth assessment easy and reproducible for clinicians, researchers and policy-makers.

Authors:Simon R Parker [aut, cre], Linda Vesel [dtc, ctb], Eric O Ohuma [dtc, ctb], Chitra Saraswati [rev], Victor Ordu [rev], Bill & Melinda Gates Foundation [fnd], London School of Hygiene & Tropical Medicine [cph]

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gigs.pdf |gigs.html✨
gigs/json (API)
NEWS

# Install 'gigs' in R:
install.packages('gigs', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/gigs/issues

Pkgdown:https://docs.ropensci.org

Datasets:
  • ig_fet - INTERGROWTH-21st Fetal Standards growth curve data
  • ig_nbs - INTERGROWTH-21st Newborn Size Standards (including very preterm) growth curve data
  • ig_nbs_coeffs - INTERGROWTH-21st Newborn Size Standards GAMLSS coefficients
  • ig_nbs_ext - Extended INTERGROWTH-21st Newborn Size Standards (including very preterm) growth curve data
  • ig_nbs_ext_coeffs - Extended INTERGROWTH-21st Newborn Size Standards GAMLSS coefficients
  • ig_png - INTERGROWTH-21st Postnatal Growth Standards growth curve data
  • life6mo - Data extract from the Low birthweight Infant Feeding Exploration (LIFE) study
  • who_gs - WHO Child Growth Standards growth curve data
  • who_gs_coeffs - WHO Child Growth Standards LMS coefficients

On CRAN:

anthropometrygrowth-standardsintergrowthwho

4.08 score 3 stars 8 scripts 34 exports 9 dependencies

Last updated 2 days agofrom:484cb3e2fd (on master). Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 19 2024
R-4.5-winNOTEDec 19 2024
R-4.5-linuxNOTEDec 19 2024
R-4.4-winOKDec 19 2024
R-4.4-macOKDec 19 2024
R-4.3-winOKDec 19 2024
R-4.3-macOKDec 19 2024

Exports:.gigs_optionscategorise_headsizecategorise_sfgacategorise_stuntingcategorise_svncategorise_wastingcategorise_wfacentile2valueclassify_growthclassify_headsizeclassify_sfgaclassify_stuntingclassify_svnclassify_wastingclassify_wfacompute_headsizecompute_sfgacompute_stuntingcompute_svncompute_wastingcompute_wfagigs_hcazgigs_input_options_setgigs_lhazgigs_option_getgigs_option_setgigs_wazgigs_wlzig_fet_estimate_fetal_weightig_fet_estimate_gareport_unitsvalue2centilevalue2zscorezscore2value

Dependencies:backportscheckmatecligamlss.distgluelifecycleMASSrlangvctrs

Introduction to gigs

Rendered fromgigs.Rmdusingknitr::rmarkdownon Dec 19 2024.

Last update: 2024-11-18
Started: 2023-04-13

Readme and manuals

Help Manual

Help pageTopics
Package-level gigs options.gigs_options
Categorise head circumference-for-age z-scores into head circumference-for-age stratacategorise_headsize
Categorise birthweight centiles into size-for-gestational age stratacategorise_sfga
Categorise length/height-for-age z-scores into stunting stratacategorise_stunting
Categorise birthweight centiles and gestational ages into small vulnerable newborn stratacategorise_svn
Categorise weight-for-length/height z-scores into wasting stratacategorise_wasting
Categorise weight-for-age z-scores into weight-for-age stratacategorise_wfa
Classify multiple growth indicators at the same time using GIGS-recommended growth standardsclassify_growth
Classify head size in 'data.frame'-like objects with GIGS-recommended growth standardsclassify_headsize
Classify size-for-gestational age in 'data.frame'-like objects with the INTERGROWTH-21st weight-for-gestational age standardclassify_sfga
Classify stunting in 'data.frame'-like objects with GIGS-recommended growth standardsclassify_stunting
Classify small vulnerable newborns in 'data.frame'-like objects with the INTERGROWTH-21st weight-for-gestational age standardclassify_svn
Classify wasting in 'data.frame'-like objects with GIGS-recommended growth standardsclassify_wasting
Classify weight-for-age in 'data.frame'-like objects with GIGS-recommended growth standardsclassify_wfa
Get head size categories using multiple vectors and GIGS-recommended growth standardscompute_headsize
Get size-for-gestational age categories using multiple vectors and the INTERGROWTH-21st weight-for-gestational age standardcompute_sfga
Get stunting categories using multiple vectors and GIGS-recommended growth standardscompute_stunting
Get small vulnerable newborn categories using multiple vectors and the INTERGROWTH-21st weight-for-gestational age standardcompute_svn
Get wasting categories using multiple vectors and GIGS-recommended growth standardscompute_wasting
Get weight-for-age categories using multiple vectors and GIGS-recommended growth standardscompute_wfa
Get and set gigs package-level optionsgigs_input_options_set gigs_options gigs_option_get gigs_option_set
Calculate z-scores for anthropometric measures according to GIGS guidancegigs_hcaz gigs_lhaz gigs_waz gigs_wlz
INTERGROWTH-21st Fetal Standards growth curve dataig_fet
Estimate fetal weight in grams using the INTERGROWTH-21st predictive equationig_fet_estimate_fetal_weight
Estimate gestational age using INTERGROWTH-21st predictive equationsig_fet_estimate_ga
INTERGROWTH-21st Newborn Size Standards (including very preterm) growth curve dataig_nbs
INTERGROWTH-21st Newborn Size Standards GAMLSS coefficientsig_nbs_coeffs
Extended INTERGROWTH-21st Newborn Size Standards (including very preterm) growth curve dataig_nbs_ext
Extended INTERGROWTH-21st Newborn Size Standards GAMLSS coefficientsig_nbs_ext_coeffs
INTERGROWTH-21st Postnatal Growth Standards growth curve dataig_png
Data extract from the Low birthweight Infant Feeding Exploration (LIFE) studylife6mo
Check required units for a conversion using gigsreport_units
Convert anthropometric measures to z-scores/centiles using international growth standardsvalue2centile value2zscore
WHO Child Growth Standards growth curve datawho_gs
WHO Child Growth Standards LMS coefficientswho_gs_coeffs
Convert z-scores/centiles to anthropometric measures using international growth standardscentile2value zscore2value