Package: occCite 0.6.0

Hannah L. Owens

occCite: Querying and Managing Large Biodiversity Occurrence Datasets

Facilitates the gathering of biodiversity occurrence data from disparate sources. Metadata is managed throughout the process to facilitate reporting and enhanced ability to repeat analyses.

Authors:Hannah L. Owens [aut, cre], Cory Merow [aut], Brian Maitner [aut], Jamie M. Kass [aut], Vijay Barve [aut], Robert P. Guralnick [aut], Damiano Oldoni [rev]

occCite_0.6.0.tar.gz
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occCite.pdf |occCite.html
occCite/json (API)
NEWS

# Install 'occCite' in R:
install.packages('occCite', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #407

Bug tracker:https://github.com/ropensci/occcite/issues

Pkgdown site:https://docs.ropensci.org

Datasets:

On CRAN:

Conda:

biodiversity-databiodiversity-informaticsbiodiversity-standardscitationsmuseum-collection-specimensmuseum-collectionsmuseum-metadata

7.54 score 23 stars 50 scripts 472 downloads 11 exports 116 dependencies

Last updated 21 days ago from:630f44c2d4 (on main). Checks:9 OK, 2 NOTE. Indexed: yes.

TargetResultTotal time
linux-devel-x86_64OK197
pkgdown docsOK261
source / vignettesOK269
linux-release-x86_64OK204
macos-release-arm64OK129
macos-oldrel-arm64NOTE150
windows-develOK136
windows-releaseOK150
windows-oldrelNOTE168
wasm-releaseOK159
wasm-oldrelOK236

Exports:GBIFLoginGBIFLoginManagergetBIENpointsgetGBIFpointsoccCitationoccCiteDataoccCiteMapoccQueryprevGBIFdownloadstudyTaxonListtaxonRectification

Dependencies:apeaskpassbackportsbase64encbib2dfbibtexBIENbslibcachemclassclassIntclicodetoolscpp11crosstalkcrulcurldata.tableDBIdigestdoParalleldplyrDTe1071evaluateextrafontextrafontdbfarverfastmapfontawesomeforeachfsgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttpcodehttpuvhttrhumaniformatisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleafletleaflet.providerslifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimenlmeoaiopensslpillarpkgconfigplyrpngpromisesproxypurrrR.methodsS3R.ooR.utilsR6rappdirsrasterRColorBrewerRcppRefManageRrgbifrlangrmarkdownRPostgreSQLRttf2pt1s2sassscalessfspstringistringrsysterratibbletidyrtidyselecttimechangetinytextriebeardunitsurltoolsutf8vctrsviridisviridisLitewafflewhiskerwithrwkxfunxml2yaml

Advanced search and citation of occurrences

Rendered fromb_Advanced.Rmdusingknitr::rmarkdownon Jun 17 2025.

Last update: 2022-03-15
Started: 2022-03-01

Simple search and citation of occurrences

Rendered froma_Simple.Rmdusingknitr::rmarkdownon Jun 17 2025.

Last update: 2024-10-28
Started: 2022-03-01