Package: occCite 0.5.9
occCite: Querying and Managing Large Biodiversity Occurrence Datasets
Facilitates the gathering of biodiversity occurrence data from disparate sources. Metadata is managed throughout the process to facilitate reporting and enhanced ability to repeat analyses.
Authors:
occCite_0.5.9.tar.gz
occCite_0.5.9.zip(r-4.5)occCite_0.5.9.zip(r-4.4)occCite_0.5.9.zip(r-4.3)
occCite_0.5.9.tgz(r-4.4-any)occCite_0.5.9.tgz(r-4.3-any)
occCite_0.5.9.tar.gz(r-4.5-noble)occCite_0.5.9.tar.gz(r-4.4-noble)
occCite_0.5.9.tgz(r-4.4-emscripten)occCite_0.5.9.tgz(r-4.3-emscripten)
occCite.pdf |occCite.html✨
occCite/json (API)
NEWS
# Install 'occCite' in R: |
install.packages('occCite', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/occcite/issues
- myOccCiteObject - Results of an occCite search for *Protea cynaroides*
biodiversity-databiodiversity-informaticsbiodiversity-standardscitationsmuseum-collection-specimensmuseum-collectionsmuseum-metadata
Last updated 5 hours agofrom:8666bd24c0 (on main). Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 15 2024 |
R-4.5-win | NOTE | Oct 15 2024 |
R-4.5-linux | NOTE | Oct 15 2024 |
R-4.4-win | NOTE | Oct 15 2024 |
R-4.4-mac | NOTE | Oct 15 2024 |
R-4.3-win | NOTE | Oct 15 2024 |
R-4.3-mac | NOTE | Oct 15 2024 |
Exports:GBIFLoginGBIFLoginManagergetBIENpointsgetGBIFpointsoccCitationoccCiteDataoccCiteMapoccQueryprevGBIFdownloadstudyTaxonListtaxonRectification
Dependencies:apeaskpassbase64encbib2dfBIENbslibcachemclassclassIntclicodetoolscolorspacecpp11crosstalkcrulcurldata.tableDBIdigestdoParalleldplyrDTe1071evaluateextrafontextrafontdbfansifarverfasterizefastmapfontawesomeforeachfsgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttpcodehttpuvhttrhumaniformatisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleafletleaflet.providerslifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeoaiopensslpillarpkgconfigplyrpngpromisesproxypurrrR6rappdirsrasterRColorBrewerRcppRcppArmadillorgbifrlangrmarkdownRPostgreSQLRttf2pt1s2sassscalessfspstringistringrsysterratibbletidyrtidyselecttimechangetinytextriebeardunitsurltoolsutf8vctrsviridisviridisLitewafflewhiskerwithrwkxfunxml2yaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
GBIFLogin Data Class | GBIFLogin GBIFLogin-class |
GBIF Login Manager | GBIFLoginManager |
Download occurrence points from BIEN | getBIENpoints |
Download occurrences from GBIF | getGBIFpoints |
Results of an occCite search for *Protea cynaroides* | myOccCiteObject |
Occurrence Citations | occCitation |
occCite Citation Class | occCiteCitation occCiteCitation-class |
occCite Data Class | occCiteData occCiteData-class |
Generating a map of downloaded points | occCiteMap |
Query from Taxon List | occQuery |
Plotting summary figures for occCite search results | plot.occCiteData |
Download previously-prepared GBIF data sets | prevGBIFdownload |
Print occCite citation object | print.occCiteCitation |
Study Taxon List | studyTaxonList |
Summary for occCite data objects | summary.occCiteData |
Taxon Rectification | taxonRectification |