Package: phylocomr 0.3.4

Luna Luisa Sanchez Reyes

phylocomr: Interface to 'Phylocom'

Interface to 'Phylocom' (<https://phylodiversity.net/phylocom/>), a library for analysis of 'phylogenetic' community structure and character evolution. Includes low level methods for interacting with the three executables, as well as higher level interfaces for methods like 'aot', 'ecovolve', 'bladj', 'phylomatic', and more.

Authors:Jeroen Ooms [aut], Scott Chamberlain [aut], Cam Webb [cph], David Ackerly [cph], Steven Kembel [cph], Luna Luisa Sanchez Reyes [aut, cre]

phylocomr_0.3.4.tar.gz
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phylocomr.pdf |phylocomr.html✨
phylocomr/json (API)
NEWS

# Install 'phylocomr' in R:
install.packages('phylocomr', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/phylocomr/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

phylogenyphylocomphylodiversitycommunity structurecharacter evolutionspeciescommunity-ecologyecologyevolution

6.83 score 15 stars 3 packages 20 scripts 247 downloads 13 exports 12 dependencies

Last updated 2 years agofrom:a1937fabaa (on master). Checks:15 OK. Indexed: yes.

TargetResultTotal time
pkgdown docsOK175
source / vignettesOK181
linux-devel-x86_64OK124
linux-devel-arm64OK341
linux-release-x86_64OK112
linux-release-arm64OK369
macos-release-x86_64OK140
macos-release-arm64OK63
macos-oldrel-x86_64OK147
macos-oldrel-arm64OK82
windows-develOK97
windows-releaseOK100
windows-oldrelOK120
wasm-releaseOK130
wasm-oldrelOK122

Exports:ecovolveph_aotph_bladjph_comdistph_comdistntph_comstructph_comtraitph_ecovolveph_pdph_phylomaticph_raophylocomphylomatic

Dependencies:clifansigluelifecyclemagrittrpillarpkgconfigrlangsystibbleutf8vctrs

Introduction to the phylocomr package

Scott Chamberlain and Jeroen Ooms

Rendered fromphylocomr.Rmdusingknitr::rmarkdownon May 04 2025.

Last update: 2022-12-02
Started: 2019-07-23

Readme and manuals

Help Manual

Help pageTopics
Phylocom interfacephylocomr-package phylocomr
Executablesecovolve executables phylocom phylomatic
aotph_aot
bladjph_bladj
comdistph_comdist ph_comdistnt
comstructph_comstruct
comtraitph_comtrait
ecovolveph_ecovolve
pd - Faith's index of phylogenetic diversityph_pd
phylomaticph_phylomatic
rao - Rao's quadratic entropyph_rao
Expected inputsphylocomr-inputs