Package: phylocomr 0.3.4

Luna Luisa Sanchez Reyes

phylocomr: Interface to 'Phylocom'

Interface to 'Phylocom' (<https://phylodiversity.net/phylocom/>), a library for analysis of 'phylogenetic' community structure and character evolution. Includes low level methods for interacting with the three executables, as well as higher level interfaces for methods like 'aot', 'ecovolve', 'bladj', 'phylomatic', and more.

Authors:Jeroen Ooms [aut], Scott Chamberlain [aut], Cam Webb [cph], David Ackerly [cph], Steven Kembel [cph], Luna Luisa Sanchez Reyes [aut, cre]

phylocomr_0.3.4.tar.gz
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phylocomr_0.3.4.tgz(r-4.5-emscripten)
phylocomr.pdf |phylocomr.html✨
phylocomr/json (API)
NEWS

# Install 'phylocomr' in R:
install.packages('phylocomr', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/phylocomr/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

phylogenyphylocomphylodiversitycommunity structurecharacter evolutionspeciescommunity-ecologyecologyevolution

6.83 score 15 stars 3 packages 20 scripts 230 downloads 13 exports 11 dependencies

Last updated from:a1937fabaa (on master). Checks:15 OK. Indexed: yes.

TargetResultTotal timeArtifact
linux-devel-arm64OK109
linux-devel-x86_64OK118
pkgdown docsOK148
source / vignettesOK183
linux-release-arm64OK135
linux-release-x86_64OK116
macos-release-arm64OK81
macos-release-x86_64OK173
macos-oldrel-arm64OK76
macos-oldrel-x86_64OK152
windows-develOK104
windows-releaseOK84
windows-oldrelOK107
wasm-releaseOK115
wasm-oldrelOK114

Exports:ecovolveph_aotph_bladjph_comdistph_comdistntph_comstructph_comtraitph_ecovolveph_pdph_phylomaticph_raophylocomphylomatic

Dependencies:cligluelifecyclemagrittrpillarpkgconfigrlangsystibbleutf8vctrs

Introduction to the phylocomr package

Scott Chamberlain and Jeroen Ooms

Rendered fromphylocomr.Rmdusingknitr::rmarkdownon Aug 02 2025.

Last update: 2022-12-02
Started: 2019-07-23

Readme and manuals

Help Manual

Help pageTopics
Phylocom interfacephylocomr-package phylocomr
Executablesecovolve executables phylocom phylomatic
aotph_aot
bladjph_bladj
comdistph_comdist ph_comdistnt
comstructph_comstruct
comtraitph_comtrait
ecovolveph_ecovolve
pd - Faith's index of phylogenetic diversityph_pd
phylomaticph_phylomatic
rao - Rao's quadratic entropyph_rao
Expected inputsphylocomr-inputs