Package: phylocomr 0.3.4

Luna Luisa Sanchez Reyes

phylocomr: Interface to 'Phylocom'

Interface to 'Phylocom' (<https://phylodiversity.net/phylocom/>), a library for analysis of 'phylogenetic' community structure and character evolution. Includes low level methods for interacting with the three executables, as well as higher level interfaces for methods like 'aot', 'ecovolve', 'bladj', 'phylomatic', and more.

Authors:Jeroen Ooms [aut], Scott Chamberlain [aut], Cam Webb [cph], David Ackerly [cph], Steven Kembel [cph], Luna Luisa Sanchez Reyes [aut, cre]

phylocomr_0.3.4.tar.gz
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phylocomr_0.3.4.tgz(r-4.5-emscripten)
phylocomr.pdf |phylocomr.html✨
phylocomr/json (API)
NEWS

# Install 'phylocomr' in R:

install.packages('phylocomr', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/phylocomr/issues

Pkgdown/docs site:https://docs.ropensci.org

On CRAN:

phylogeny phylocom phylodiversity community structure character evolution species community-ecology ecology evolution

6.95 score 15 stars 4 packages 20 scripts 483 downloads 13 exports 11 dependencies

Last updated from:a1937fabaa (on master). Checks:14 OK. Indexed: yes.

Target	Result	Total time
linux-devel-arm64	OK	125
linux-devel-x86_64	OK	122
pkgdown docs	OK	132
source / vignettes	OK	297
linux-release-arm64	OK	109
linux-release-x86_64	OK	117
macos-release-arm64	OK	84
macos-release-x86_64	OK	314
macos-oldrel-arm64	OK	127
macos-oldrel-x86_64	OK	209
windows-devel	OK	82
windows-release	OK	85
windows-oldrel	OK	102
wasm-release	OK	110

Exports:ecovolve ph_aot ph_bladj ph_comdist ph_comdistnt ph_comstruct ph_comtrait ph_ecovolve ph_pd ph_phylomatic ph_rao phylocom phylomatic

Dependencies:cli glue lifecycle magrittr pillar pkgconfig rlang sys tibble utf8 vctrs

Introduction to the phylocomr package

Scott Chamberlain and Jeroen Ooms

Rendered fromphylocomr.Rmdusingknitr::rmarkdownon Oct 31 2025.

Last update: 2022-12-02
Started: 2019-07-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Phylocom interface	phylocomr-package phylocomr
Executables	ecovolve executables phylocom phylomatic
aot	ph_aot
bladj	ph_bladj
comdist	ph_comdist ph_comdistnt
comstruct	ph_comstruct
comtrait	ph_comtrait
ecovolve	ph_ecovolve
pd - Faith's index of phylogenetic diversity	ph_pd
phylomatic	ph_phylomatic
rao - Rao's quadratic entropy	ph_rao
Expected inputs	phylocomr-inputs