Package: phylogram 2.1.0.9000

Shaun Wilkinson

phylogram: Dendrograms for Evolutionary Analysis

Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.

Authors:Shaun Wilkinson [aut, cre], Simon Davy [aut]

phylogram_2.1.0.9000.tar.gz
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phylogram.pdf |phylogram.html✨
phylogram/json (API)

# Install 'phylogram' in R:
install.packages('phylogram', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #212

Bug tracker:https://github.com/ropensci/phylogram/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

peer-reviewed

8.53 score 11 stars 8 packages 257 scripts 746 downloads 44 mentions 11 exports 5 dependencies

Last updated 5 years agofrom:9b7ce7672a (on master). Checks:10 OK. Indexed: yes.

TargetResultTotal time
source / vignettesOK161
pkgdown docsOK266
linux-devel-x86_64OK120
linux-release-x86_64OK114
macos-release-arm64OK64
macos-oldrel-arm64OK98
windows-develOK66
windows-releaseOK94
windows-oldrelOK77
wasm-releaseOK85

Exports:as.cladogramas.dendrogramas.dendrogram.phyloas.phyloas.phylo.dendrogramladderpruneread.dendrogramremidpointrepositionwrite.dendrogram

Dependencies:apedigestlatticenlmeRcpp

phylogram: an R package for phylogenetic analysis with dendrograms

Shaun P. Wilkinson ^1,2^ and Simon K. Davy ^1^

Rendered fromphylogram-vignette.Rmdusingknitr::rmarkdownon May 29 2025.

Last update: 2018-06-26
Started: 2017-01-18