Package: phylogram 2.1.0.9000

Shaun Wilkinson

phylogram: Dendrograms for Evolutionary Analysis

Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.

Authors:Shaun Wilkinson [aut, cre], Simon Davy [aut]

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phylogram.pdf |phylogram.html✨
phylogram/json (API)

# Install 'phylogram' in R:
install.packages('phylogram', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/phylogram/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

peer-reviewed

8.52 score 11 stars 9 packages 222 scripts 658 downloads 44 mentions 11 exports 5 dependencies

Last updated 5 years agofrom:9b7ce7672a (on master). Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 27 2024
R-4.5-winOKDec 27 2024
R-4.5-linuxOKDec 27 2024
R-4.4-winOKDec 27 2024
R-4.4-macOKDec 27 2024
R-4.3-winOKDec 27 2024
R-4.3-macOKDec 27 2024

Exports:as.cladogramas.dendrogramas.dendrogram.phyloas.phyloas.phylo.dendrogramladderpruneread.dendrogramremidpointrepositionwrite.dendrogram

Dependencies:apedigestlatticenlmeRcpp

phylogram: an R package for phylogenetic analysis with dendrograms

Shaun P. Wilkinson ^1,2^ and Simon K. Davy ^1^

Rendered fromphylogram-vignette.Rmdusingknitr::rmarkdownon Dec 27 2024.

Last update: 2018-06-26
Started: 2017-01-18