Package: rentrez 1.2.3

David Winter

rentrez: 'Entrez' in R

Provides an R interface to the NCBI's 'EUtils' API, allowing users to search databases like 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and 'PubMed' <https://pubmed.ncbi.nlm.nih.gov/>, process the results of those searches and pull data into their R sessions.

Authors:David Winter [aut, cre], Scott Chamberlain [ctb], Han Guangchun [ctb]

rentrez_1.2.3.tar.gz
rentrez_1.2.3.zip(r-4.6)rentrez_1.2.3.zip(r-4.5)rentrez_1.2.3.zip(r-4.4)
rentrez_1.2.3.tgz(r-4.5-any)rentrez_1.2.3.tgz(r-4.4-any)
rentrez_1.2.3.tar.gz(r-4.6-any)rentrez_1.2.3.tar.gz(r-4.5-any)
rentrez_1.2.3.tgz(r-4.4-emscripten)
rentrez.pdf |rentrez.html✨
rentrez/json (API)
NEWS

# Install 'rentrez' in R:
install.packages('rentrez', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/rentrez/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

13.76 score 201 stars 107 packages 852 scripts 26k downloads 36 mentions 16 exports 9 dependencies

Last updated 5 years agofrom:a225f21387 (on master). Checks:1 ERROR, 2 OK, 7 NOTE. Indexed: yes.

TargetResultTotal time
pkgdown docsERROR293
source / vignettesOK341
linux-devel-x86_64NOTE391
linux-release-x86_64NOTE187
macos-release-arm64NOTE76
macos-oldrel-arm64NOTE122
windows-develNOTE67
windows-releaseNOTE60
windows-oldrelNOTE95
wasm-releaseOK125

Exports:entrez_citmatchentrez_db_linksentrez_db_searchableentrez_db_summaryentrez_dbsentrez_fetchentrez_global_queryentrez_infoentrez_linkentrez_postentrez_searchentrez_summaryextract_from_esummarylinkout_urlsparse_pubmed_xmlset_entrez_key

Dependencies:askpasscurlhttrjsonlitemimeopensslR6sysXML

Rentrez Tutorial

David winter

Rendered fromrentrez_tutorial.Rmdusingknitr::rmarkdownon May 29 2025.

Last update: 2020-11-10
Started: 2014-06-27