Package: rsnps 0.6.1

Julia Gustavsen

rsnps: Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web

A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (<https://opensnp.org>), and 'NBCIs' 'dbSNP' database (<https://www.ncbi.nlm.nih.gov/projects/SNP/>). Functions are included for searching for 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.

Authors:Julia Gustavsen [aut, cre], Sina Rüeger [aut], Scott Chamberlain [aut], Kevin Ushey [aut], Hao Zhu [aut]

rsnps_0.6.1.tar.gz
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rsnps_0.6.1.tgz(r-4.4-any)rsnps_0.6.1.tgz(r-4.3-any)
rsnps_0.6.1.tar.gz(r-4.5-noble)rsnps_0.6.1.tar.gz(r-4.4-noble)
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rsnps.pdf |rsnps.html✨
rsnps/json (API)
NEWS

# Install 'rsnps' in R:
install.packages('rsnps', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/rsnps/issues

On CRAN:

genesnpsequenceapiwebapi-clientspeciesdbsnpopensnpncbigenotypedatasnpsweb-api

19 exports 52 stars 6.59 score 23 dependencies 4 mentions 63 scripts 122 downloads

Last updated 1 years agofrom:1a604aef78 (on master). Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 28 2024
R-4.5-winOKSep 28 2024
R-4.5-linuxOKSep 28 2024
R-4.4-winOKSep 28 2024
R-4.4-macOKSep 28 2024
R-4.3-winOKSep 28 2024
R-4.3-macOKSep 28 2024

Exports:allgensnpallphenotypesannotationsdownload_usersfetch_genotypesgenotypesld_searchLDSearchncbi_snp_queryNCBI_snp_queryncbi_snp_query2NCBI_snp_query2ncbi_snp_summaryphenotypesphenotypes_byidread_usersrsnpsCachetrygetusers

Dependencies:askpassclicrulcurldata.tablegluehttpcodehttrjsonlitelifecyclemagrittrmimeopensslplyrR6Rcpprlangstringistringrsystriebeardurltoolsvctrs

rsnps tutorial

Rendered fromrsnps.Rmdusingknitr::knitron Sep 28 2024.

Last update: 2023-07-15
Started: 2020-08-26