Package: tidypmc 1.8
Chris Stubben
tidypmc: Parse Full Text XML Documents from PubMed Central
Parse XML documents from the Open Access subset of Europe PubMed Central <https://europepmc.org> including section paragraphs, tables, captions and references.
Authors:
tidypmc_1.8.tar.gz
tidypmc_1.8.zip(r-4.6)tidypmc_1.8.zip(r-4.5)tidypmc_1.8.zip(r-4.4)
tidypmc_1.8.tgz(r-4.5-any)tidypmc_1.8.tgz(r-4.4-any)
tidypmc_1.8.tar.gz(r-4.6-any)tidypmc_1.8.tar.gz(r-4.5-any)
tidypmc_1.8.tgz(r-4.5-emscripten)
tidypmc.pdf |tidypmc.html✨
tidypmc/json (API)
NEWS
| # Install 'tidypmc' in R: |
| install.packages('tidypmc', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Reviews:rOpenSci Software Review #290
Bug tracker:https://github.com/ropensci/tidypmc/issues
Pkgdown/docs site:https://docs.ropensci.org
Last updated from:d9739ce3ef (on master). Checks:7 NOTE, 3 OK. Indexed: yes.
| Target | Result | Total time | Artifact |
|---|---|---|---|
| linux-devel-x86_64 | NOTE | 134 | |
| pkgdown docs | OK | 186 | |
| source / vignettes | OK | 313 | |
| linux-release-x86_64 | NOTE | 134 | |
| macos-release-arm64 | NOTE | 86 | |
| macos-oldrel-arm64 | NOTE | 113 | |
| windows-devel | NOTE | 117 | |
| windows-release | NOTE | 121 | |
| windows-oldrel | NOTE | 76 | |
| wasm-release | OK | 115 |
Exports:collapse_rowspmc_captionpmc_metadatapmc_referencepmc_tablepmc_textpmc_xmlseparate_genesseparate_refsseparate_tagsseparate_text
Dependencies:bitbit64clicliprcpp11crayondplyrgenericsgluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6RcppreadrrlangSnowballCstringistringrtibbletidyselecttokenizerstzdbutf8vctrsvroomwithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Collapse a list of PubMed Central tables | collapse_rows |
| Split captions into sentences | pmc_caption |
| Get article metadata | pmc_metadata |
| Format references cited | pmc_reference |
| Convert table nodes to tibbles | pmc_table |
| Split section paragraphs into sentences | pmc_text |
| Download XML from PubMed Central | pmc_xml |
| Separate genes and operons into multiple rows | separate_genes |
| Separate references cited into multiple rows | separate_refs |
| Separate locus tag into multiple rows | separate_tags |
| Separate all matching text into multiple rows | separate_text |