Package: tidyqpcr 1.0
tidyqpcr: Quantitative PCR Analysis with the Tidyverse
For reproducible quantitative PCR (qPCR) analysis building on packages from the ’tidyverse’, notably ’dplyr’ and ’ggplot2’. It normalizes (by ddCq), summarizes, and plots pre-calculated Cq data, and plots raw amplification and melt curves from Roche Lightcycler (tm) machines. It does NOT (yet) calculate Cq data from amplification curves.
Authors:
tidyqpcr_1.0.tar.gz
tidyqpcr_1.0.zip(r-4.5)tidyqpcr_1.0.zip(r-4.4)tidyqpcr_1.0.zip(r-4.3)
tidyqpcr_1.0.tgz(r-4.4-any)tidyqpcr_1.0.tgz(r-4.3-any)
tidyqpcr_1.0.tar.gz(r-4.5-noble)tidyqpcr_1.0.tar.gz(r-4.4-noble)
tidyqpcr_1.0.tgz(r-4.4-emscripten)tidyqpcr_1.0.tgz(r-4.3-emscripten)
tidyqpcr.pdf |tidyqpcr.html✨
tidyqpcr/json (API)
# Install 'tidyqpcr' in R: |
install.packages('tidyqpcr', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/tidyqpcr/issues
miqeqpcrqpcr-analysistidyverse
Last updated 6 months agofrom:0d3f62f16c (on main). Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 26 2024 |
R-4.5-win | NOTE | Sep 26 2024 |
R-4.5-linux | NOTE | Sep 26 2024 |
R-4.4-win | NOTE | Sep 26 2024 |
R-4.4-mac | NOTE | Sep 26 2024 |
R-4.3-win | NOTE | Sep 26 2024 |
R-4.3-mac | NOTE | Sep 26 2024 |
Exports:calculate_deltacq_bysampleidcalculate_deltadeltacq_bytargetidcalculate_drdt_platecalculate_dydxcalculate_efficiencycalculate_efficiency_bytargetidcalculate_normvaluecreate_blank_platecreate_blank_plate_1536wellcreate_blank_plate_96wellcreate_colkey_4diln_2ctrl_in_24create_colkey_6_in_24create_colkey_6diln_2ctrl_in_24create_rowkey_4_in_16create_rowkey_8_in_16_plaindebaselinedisplay_platedisplay_plate_qpcrdisplay_plate_valuelabel_plate_rowcolmake_row_names_echo1536make_row_names_lc1536read_lightcycler_1colour_cqread_lightcycler_1colour_raw
Dependencies:assertthatbitbit64clicliprcolorspacecpp11crayondplyrfansifarverforcatsgenericsggplot2gluegtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerreadrrlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr
Delta Cq 96-well plate qPCR analysis example
Rendered fromdeltacq_96well_vignette.Rmd
usingknitr::rmarkdown
on Sep 26 2024.Last update: 2022-06-08
Started: 2020-09-04
Introduction to designing an experiment and setting up a plate plan in tidyqpcr
Rendered fromplatesetup_vignette.Rmd
usingknitr::rmarkdown
on Sep 26 2024.Last update: 2022-06-08
Started: 2020-03-15
Multifactorial multi-plate qPCR analysis example
Rendered frommultifactor_vignette.Rmd
usingknitr::rmarkdown
on Sep 26 2024.Last update: 2022-06-08
Started: 2019-09-25
Primers and probes calibration vignette
Rendered fromcalibration_vignette.Rmd
usingknitr::rmarkdown
on Sep 26 2024.Last update: 2022-06-08
Started: 2019-09-25