Package: traits 0.5.1
traits: Species Trait Data from Around the Web
Species trait data from many different sources, including sequence data from 'NCBI' (<https://www.ncbi.nlm.nih.gov/>), plant trait data from 'BETYdb', data from 'EOL' 'Traitbank', 'Birdlife' International, and more.
Authors:
traits_0.5.1.tar.gz
traits_0.5.1.zip(r-4.5)traits_0.5.1.zip(r-4.4)traits_0.5.1.zip(r-4.3)
traits_0.5.1.tgz(r-4.4-any)traits_0.5.1.tgz(r-4.3-any)
traits_0.5.1.tar.gz(r-4.5-noble)traits_0.5.1.tar.gz(r-4.4-noble)
traits_0.5.1.tgz(r-4.4-emscripten)traits_0.5.1.tgz(r-4.3-emscripten)
traits.pdf |traits.html✨
traits/json (API)
NEWS
# Install 'traits' in R: |
install.packages('traits', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/traits/issues
Pkgdown:https://docs.ropensci.org
- plantatt - PLANTATT plant traits dataset
traitsapiweb-servicesspeciestaxonomyapi-client
Last updated 3 months agofrom:f7459500c9 (on master). Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 06 2024 |
R-4.5-win | OK | Dec 06 2024 |
R-4.5-linux | OK | Dec 06 2024 |
R-4.4-win | OK | Dec 06 2024 |
R-4.4-mac | OK | Dec 06 2024 |
R-4.3-win | OK | Dec 06 2024 |
R-4.3-mac | OK | Dec 06 2024 |
Exports:betydb_citationbetydb_experimentbetydb_querybetydb_recordbetydb_searchbetydb_sitebetydb_speciebetydb_traitbirdlife_habitatbirdlife_threatscoral_locationscoral_methodologiescoral_resourcescoral_speciescoral_taxacoral_traitseol_invasive_fe_nativeg_invasiveis_nativeledancbi_byidncbi_bynamencbi_searchertaxa_searchtr_ernesttr_usdatr_zannetraitbanktraits_cache
Dependencies:apeaskpassassertthatbackportsbase64encbitbit64boldbslibcachemcheckmateclicliprclustercodetoolscolorspacecpp11crayoncrulcurldata.tabledigestdplyrevaluatefansifarverfastmapfastmatchfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshoardrhtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppreadrrentrezrexritisrlangrmarkdownrnclrotlrpartrredlistrstudioapirvestsassscalesselectrsolriumstringistringrsystaxizetibbletidyselecttinytextriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
traits - Species trait data from around the web | traits-package traits |
Search for traits from BETYdb | betydb betydb_citation betydb_experiment betydb_record betydb_site betydb_specie betydb_trait |
Query a BETY table | betydb_query betydb_search |
Get bird habitat information from BirdLife/IUCN | birdlife_habitat |
Get bird threat information from BirdLife/IUCN | birdlife_threats |
Access LEDA trait data | leda |
Retrieve gene sequences from NCBI by accession number. | ncbi_byid |
Retrieve gene sequences from NCBI by taxon name and gene names. | ncbi_byname |
Search for gene sequences available for taxa from NCBI. | ncbi_searcher |
PLANTATT plant traits dataset | plantatt |
Search for traits by taxa names | taxa_search |
Amniote life history dataset | tr_ernest |
Zanne et al. plant dataset | tr_zanne |
Search for traits from EOL's Traitbank | traitbank |
Caching | traits_cache |
Defunct functions in traits | traits-defunct |