Package: treebase 0.1.5

Carl Boettiger

treebase: Discovery, Access and Manipulation of 'TreeBASE' Phylogenies

Interface to the API for 'TreeBASE' <http://treebase.org> from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic trees (of species, population, or genes) and the data used to create them.

Authors:Carl Boettiger [aut, cre], Duncan Temple Lang [aut]

treebase_0.1.5.tar.gz
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treebase.pdf |treebase.html✨
treebase/json (API)
NEWS

# Install 'treebase' in R:
install.packages('treebase', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/treebase/issues

Pkgdown/docs site:https://docs.ropensci.org

Datasets:

On CRAN:

Conda:

6.83 score 10 stars 1 packages 49 scripts 1.5k downloads 3 mentions 7 exports 16 dependencies

Last updated from:5954c072bb (on master). Checks:10 OK. Indexed: yes.

TargetResultTotal timeArtifact
linux-devel-x86_64OK138
pkgdown docsOK175
source / vignettesOK224
linux-release-x86_64OK159
macos-devel-arm64OK126
macos-release-arm64OK82
windows-develOK87
windows-releaseOK83
windows-oldrelOK93
wasm-releaseOK118

Exports:cache_treebasedownload_metadatadrop_nontreesdryad_metadatahave_branchlengthmetadatasearch_treebase

Dependencies:apeaskpassbitopscurldigesthttrjsonlitelatticemimenlmeopensslR6RcppRCurlsysXML

Treebase Tutorial

Carl Boettiger

Rendered fromvignette.Rmdusingknitr::rmarkdownon Dec 16 2025.

Last update: 2024-02-16
Started: 2014-02-20