Package: treedata.table 0.1.1

Cristian Roman-Palacios

treedata.table: Manipulation of Matched Phylogenies and Data using 'data.table'

An implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class 'treedata.table'. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a 'data.table' syntax when performing operations on the trait dataset within the 'treedata.table' object. For more details see Roman-Palacios et al. (2021) <doi:10.7717/peerj.12450>.

Authors:Josef Uyeda [aut], Cristian Roman-Palacios [aut, cre], April Wright [aut], Luke Harmon [ctb], Hugo Gruson [rev], Kari Norman [rev]

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treedata.table.pdf |treedata.table.html✨
treedata.table/json (API)

# Install 'treedata.table' in R:
install.packages('treedata.table', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #367

Bug tracker:https://github.com/ropensci/treedata.table/issues

Pkgdown/docs site:https://ropensci.github.io

Datasets:

On CRAN:

Conda:

6.42 score 7 stars 25 scripts 184 downloads 10 exports 43 dependencies

Last updated from:bc4d7cfa0e (on master). Checks:10 OK. Indexed: yes.

TargetResultTotal timeArtifact
linux-devel-x86_64OK177
pkgdown docsOK323
source / vignettesOK951
linux-release-x86_64OK213
macos-release-arm64OK96
macos-oldrel-arm64OK149
windows-develOK112
windows-releaseOK149
windows-oldrelOK106
wasm-releaseOK199

Exports:as.treedata.tabledetectAllCharactersdetectCharacterTypedroptreedata.tableextractVectorfilterMatrixforceNameshasNamespulltreedata.tabletdt

Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcpp11data.tableDEoptimdeSolvedigestdoParallelexpmfastmatchforeachgeigergenericsglueigraphiteratorslatticelazyevallifecyclemagrittrmapsMASSMatrixmnormtmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspkgconfigquadprogRcpprlangscatterplot3dsubplexvctrs

Additional Functions for Manipulating Data in treedata.table

Josef Uyeda, Cristian Roman-Palacios, April Wright

Rendered fromD_AdditionalFunctions_treedata.table.Rmdusingknitr::rmarkdownon Dec 05 2025.

Last update: 2021-09-10
Started: 2020-09-07

Breve Introducción al Paquete treedata.table

Cristian Roman-Palacios, April Wright, Josef Uyeda

Rendered fromAB_treedata.table_intro_spanish.Rmdusingknitr::rmarkdownon Dec 05 2025.

Last update: 2021-09-10
Started: 2020-09-07

Getting Started With The treedata.table Package

Josef Uyeda, Cristian Roman-Palacios, April Wright

Rendered fromAA_treedata.table_intro_english.Rmdusingknitr::rmarkdownon Dec 05 2025.

Last update: 2021-09-10
Started: 2020-09-07

Partially Matching of Trait Data and Tree(s) in treedata.table

Josef Uyeda, Cristian Roman-Palacios, April Wright

Rendered fromC_PartialMatching.Rmdusingknitr::rmarkdownon Dec 05 2025.

Last update: 2021-09-10
Started: 2020-09-07

Working With multiPhylo Objects in treedata.table

Josef Uyeda, Cristian Roman-Palacios, April Wright

Rendered fromB_multiphylo_treedata.table.Rmdusingknitr::rmarkdownon Dec 05 2025.

Last update: 2021-09-10
Started: 2020-09-07