Package: treedata.table 0.1.1

Cristian Roman-Palacios

treedata.table: Manipulation of Matched Phylogenies and Data using 'data.table'

An implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class treedata.table. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a 'data.table' syntax when performing operations on the trait dataset within the treedata.table object.

Authors:Josef Uyeda [aut], Cristian Roman-Palacios [aut, cre], April Wright [aut], Luke Harmon [ctb], Hugo Gruson [rev], Kari Norman [rev]

treedata.table_0.1.1.tar.gz
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treedata.table.pdf |treedata.table.html
treedata.table/json (API)

# Install 'treedata.table' in R:
install.packages('treedata.table', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/treedata.table/issues

Datasets:

On CRAN:

10 exports 7 stars 6.10 score 43 dependencies 24 scripts 21 downloads

Last updated 3 years agofrom:33d0086a42 (on master). Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 28 2024
R-4.5-winNOTESep 28 2024
R-4.5-linuxNOTESep 28 2024
R-4.4-winOKSep 28 2024
R-4.4-macOKSep 28 2024
R-4.3-winOKSep 28 2024
R-4.3-macOKSep 28 2024

Exports:as.treedata.tabledetectAllCharactersdetectCharacterTypedroptreedata.tableextractVectorfilterMatrixforceNameshasNamespulltreedata.tabletdt

Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcpp11data.tableDEoptimdeSolvedigestdoParallelexpmfastmatchforeachgeigergenericsglueigraphiteratorslatticelazyevallifecyclemagrittrmapsMASSMatrixmnormtmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspkgconfigquadprogRcpprlangscatterplot3dsubplexvctrs

Additional Functions for Manipulating Data in treedata.table

Rendered fromD_AdditionalFunctions_treedata.table.Rmdusingknitr::rmarkdownon Sep 28 2024.

Last update: 2021-09-10
Started: 2020-09-07

Breve Introducción al Paquete treedata.table

Rendered fromAB_treedata.table_intro_spanish.Rmdusingknitr::rmarkdownon Sep 28 2024.

Last update: 2021-09-10
Started: 2020-09-07

Getting Started With The treedata.table Package

Rendered fromAA_treedata.table_intro_english.Rmdusingknitr::rmarkdownon Sep 28 2024.

Last update: 2021-09-10
Started: 2020-09-07

Partially Matching of Trait Data and Tree(s) in treedata.table

Rendered fromC_PartialMatching.Rmdusingknitr::rmarkdownon Sep 28 2024.

Last update: 2021-09-10
Started: 2020-09-07

Working With multiPhylo Objects in treedata.table

Rendered fromB_multiphylo_treedata.table.Rmdusingknitr::rmarkdownon Sep 28 2024.

Last update: 2021-09-10
Started: 2020-09-07