Package: treedata.table 0.1.1
Cristian Roman-Palacios
treedata.table: Manipulation of Matched Phylogenies and Data using 'data.table'
An implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class treedata.table. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a 'data.table' syntax when performing operations on the trait dataset within the treedata.table object.
Authors:
treedata.table_0.1.1.tar.gz
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treedata.table.pdf |treedata.table.html✨
treedata.table/json (API)
| # Install 'treedata.table' in R: |
| install.packages('treedata.table', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/treedata.table/issues
- anolis - Anole data
Last updated 3 years agofrom:33d0086a42 (on master). Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 28 2024 |
| R-4.5-win | NOTE | Sep 28 2024 |
| R-4.5-linux | NOTE | Sep 28 2024 |
| R-4.4-win | OK | Sep 28 2024 |
| R-4.4-mac | OK | Sep 28 2024 |
| R-4.3-win | OK | Sep 28 2024 |
| R-4.3-mac | OK | Sep 28 2024 |
Exports:as.treedata.tabledetectAllCharactersdetectCharacterTypedroptreedata.tableextractVectorfilterMatrixforceNameshasNamespulltreedata.tabletdt
Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcpp11data.tableDEoptimdeSolvedigestdoParallelexpmfastmatchforeachgeigergenericsglueigraphiteratorslatticelazyevallifecyclemagrittrmapsMASSMatrixmnormtmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspkgconfigquadprogRcpprlangscatterplot3dsubplexvctrs
Additional Functions for Manipulating Data in treedata.table
Rendered fromD_AdditionalFunctions_treedata.table.Rmdusingknitr::rmarkdownon Sep 28 2024.Last update: 2021-09-10
Started: 2020-09-07
Breve Introducción al Paquete treedata.table
Rendered fromAB_treedata.table_intro_spanish.Rmdusingknitr::rmarkdownon Sep 28 2024.Last update: 2021-09-10
Started: 2020-09-07
Getting Started With The treedata.table Package
Rendered fromAA_treedata.table_intro_english.Rmdusingknitr::rmarkdownon Sep 28 2024.Last update: 2021-09-10
Started: 2020-09-07
Partially Matching of Trait Data and Tree(s) in treedata.table
Rendered fromC_PartialMatching.Rmdusingknitr::rmarkdownon Sep 28 2024.Last update: 2021-09-10
Started: 2020-09-07
Working With multiPhylo Objects in treedata.table
Rendered fromB_multiphylo_treedata.table.Rmdusingknitr::rmarkdownon Sep 28 2024.Last update: 2021-09-10
Started: 2020-09-07
