Package: SymbiotaR2 0.0-1
Austin Koontz
SymbiotaR2: Downloading Data from Symbiota2 Portals into R
Download data from Symbiota2 portals using Symbiota's API. Covers the Checklists, Collections, Crowdsource, Exsiccati, Glossary, ImageProcessor, Key, Media, Occurrence, Reference, Taxa, Traits, and UserRoles API families. Each Symbiota2 portal owner can load their own plugins (and modified code), and so this package may not cover every possible API endpoint from a given Symbiota2 instance.
Authors:
SymbiotaR2_0.0-1.tar.gz
SymbiotaR2_0.0-1.zip(r-4.5)SymbiotaR2_0.0-1.zip(r-4.4)SymbiotaR2_0.0-1.zip(r-4.3)
SymbiotaR2_0.0-1.tgz(r-4.4-any)SymbiotaR2_0.0-1.tgz(r-4.3-any)
SymbiotaR2_0.0-1.tar.gz(r-4.5-noble)SymbiotaR2_0.0-1.tar.gz(r-4.4-noble)
SymbiotaR2_0.0-1.tgz(r-4.4-emscripten)SymbiotaR2_0.0-1.tgz(r-4.3-emscripten)
SymbiotaR2.pdf |SymbiotaR2.html✨
SymbiotaR2/json (API)
NEWS
| # Install 'SymbiotaR2' in R: |
| install.packages('SymbiotaR2', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pearselab/symbiotar2/issues
databaselibraryspecimen-recordssymbiotasymbiota2symbiota2-portal
Last updated 3 years agofrom:f0231b5106 (on master). Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 27 2024 |
| R-4.5-win | NOTE | Nov 27 2024 |
| R-4.5-linux | NOTE | Nov 27 2024 |
| R-4.4-win | NOTE | Nov 27 2024 |
| R-4.4-mac | NOTE | Nov 27 2024 |
| R-4.3-win | OK | Nov 27 2024 |
| R-4.3-mac | OK | Nov 27 2024 |
Exports:AccessStatsAssociationsAuthoritiesCategoriesCentralCharacterHeadingCharactersCharacterStateImagesCharacterStatesChecklistProjectsChecklistsCollectionsCommentsConfigurationsCoordinatesDatasetLinkDatasetsDescriptionBlockDescriptionDeletionsDeterminationsDuplicatesEditLocksEditsExchangeFullTextGlossaryGuidDeterminationsGuidOccurrencesInstitutionsLoansLookupChronostratigraphyLookupCountiesLookupCountriesLookupLanguagesLookupReferenceTypesLookupStateProvincesNumbersOccurrencesProjectsQueueRawLabelsSchemaVersionStatsSymbiotaR2_setupSynonymyTagKeyTaxaTaxaLinkTermLinkTitlesTraitsUploadMappingsUploadParametersVerification
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieves Checklists resources from the Symbiota2 server | ChecklistProjects Checklists Coordinates TaxaLink |
| Retrieves Collection resources from the Symbiota2 server | Categories Collection Collections Institutions Stats |
| Retrieves Crowdsource resources from the Symbiota2 server | Central Crowdsource Queue |
| Retrieves Exsiccati resources from the Symbiota2 server | Exsiccati Numbers Titles |
| Retrieves Glossary resources from the Symbiota2 server | Glossary TermLink |
| Retrieves ImageProcessor resources from the Symbiota2 server | ImagePRocessor Projects RawLabels |
| Retrieves Key resources from the Symbiota2 server | CharacterHeading Characters CharacterStateImages CharacterStates DescriptionDeletions Key |
| Retrieves Media resources from the Symbiota2 server | Media TagKey |
| Retrieves Miscellaneous resources from the Symbiota2 server | Configurations LookupLanguages Miscellaneous SchemaVersion |
| Retrieves Occurrence resources from the Symbiota2 server | AccessStats Associations Comments DatasetLink Datasets Determinations Duplicates EditLocks Edits Exchange FullText GuidDeterminations GuidOccurrences Loans LookupChronostratigraphy LookupCounties LookupCountries LookupStateProvinces Occurrences UploadMappings UploadParameters Verification |
| Retrieves Reference resources from the Symbiota2 server | LookupReferenceTypes Reference |
| Downloading data from Symbiota2 portals into R | SymbiotaR2-package package-SymbiotaR2 SymbiotaR2 |
| Set default URL for Symbiota2 portal download | SymbiotaR2_setup |
| Retrieves Taxa resources from the Symbiota2 server | Authorities DescriptionBlock Synonymy Taxa |
| Retrieves Traits resources from the Symbiota2 server | Traits |
