Package: helminthR 1.0.10
Tad Dallas
helminthR: Access London Natural History Museum Host-Helminth Record Database
Access to large host-parasite data is often hampered by the availability of data and difficulty in obtaining it in a programmatic way to encourage analyses. 'helminthR' provides a programmatic interface to the London Natural History Museum's host-parasite database, one of the largest host-parasite databases existing currently <https://www.nhm.ac.uk/research-curation/scientific-resources/taxonomy-systematics/host-parasites/>. The package allows the user to query by host species, parasite species, and geographic location.
Authors:
helminthR_1.0.10.tar.gz
helminthR_1.0.10.zip(r-4.5)helminthR_1.0.10.zip(r-4.4)helminthR_1.0.10.zip(r-4.3)
helminthR_1.0.10.tgz(r-4.4-any)helminthR_1.0.10.tgz(r-4.3-any)
helminthR_1.0.10.tar.gz(r-4.5-noble)helminthR_1.0.10.tar.gz(r-4.4-noble)
helminthR_1.0.10.tgz(r-4.4-emscripten)helminthR_1.0.10.tgz(r-4.3-emscripten)
helminthR.pdf |helminthR.html✨
helminthR/json (API)
NEWS
| # Install 'helminthR' in R: |
| install.packages('helminthR', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/helminthr/issues
Pkgdown:https://docs.ropensci.org
- locations - Table of geographic location names, and associated coordinates
disease-networkshelminthopen-dataparasites
Last updated 2 years agofrom:549957ab0b (on master). Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 12 2024 |
| R-4.5-win | OK | Dec 12 2024 |
| R-4.5-linux | OK | Dec 12 2024 |
| R-4.4-win | OK | Dec 12 2024 |
| R-4.4-mac | OK | Dec 12 2024 |
| R-4.3-win | OK | Dec 12 2024 |
| R-4.3-mac | OK | Dec 12 2024 |
Exports:cleanDatafindHostfindLocationfindParasite
Dependencies:apeaskpassassertthatbackportsbase64encbitbit64boldbslibcachemcheckmateclicliprclustercodetoolscolorspacecpp11crayoncrulcurldata.tabledigestdplyrevaluatefansifarverfastmapfastmatchfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppreadrrentrezrexritisrlangrmarkdownrnclrotlrpartrredlistrstudioapirvestsassscalesselectrsolriumstringistringrsystaxizetibbletidyselecttinytextriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Access London Natural History Museum host-helminth record database | helminthR-package helminthR |
| Clean helminth parasite occurrence data | cleanData |
| Find parasite occurrence data for given host. | findHost |
| Find host-parasite interactions for a given location | findLocation |
| Find host-parasite interactions for a given parasite species. | findParasite |
| Table of geographic location names, and associated coordinates | locations |
