Package: mcbette 1.15.3

Richèl J.C. Bilderbeek

mcbette: Model Comparison Using 'babette'

'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'mcbette' allows to do a Bayesian model comparison over some site and clock models, using 'babette' (<https://github.com/ropensci/babette/>).

Authors:Richèl J.C. Bilderbeek [aut, cre], Joëlle Barido-Sottani [rev], Vikram Baliga [rev]

mcbette_1.15.3.tar.gz
mcbette_1.15.3.zip(r-4.6)mcbette_1.15.3.zip(r-4.5)mcbette_1.15.3.zip(r-4.4)
mcbette_1.15.3.tgz(r-4.5-any)mcbette_1.15.3.tgz(r-4.4-any)
mcbette_1.15.3.tar.gz(r-4.6-any)mcbette_1.15.3.tar.gz(r-4.5-any)
mcbette_1.15.3.tgz(r-4.5-emscripten)mcbette_1.15.3.tgz(r-4.4-emscripten)
mcbette.pdf |mcbette.html✨
mcbette/json (API)

# Install 'mcbette' in R:
install.packages('mcbette', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #360

Bug tracker:https://github.com/ropensci/mcbette/issues

Pkgdown site:https://docs.ropensci.org

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On CRAN:

Conda:

openjdk

5.12 score 7 stars 19 scripts 227 downloads 15 exports 128 dependencies

Last updated 12 months ago from:c223b0f362 (on master). Checks:9 OK, 2 NOTE. Indexed: yes.

TargetResultTotal timeArtifact
linux-devel-x86_64OK155
pkgdown docsOK170
source / vignettesOK204
linux-release-x86_64OK152
macos-release-arm64OK63
macos-oldrel-arm64NOTE103
windows-develOK155
windows-releaseOK110
windows-oldrelNOTE105
wasm-releaseOK155
wasm-oldrelOK223

Exports:calc_weightscan_run_mcbettecheck_beast2_ns_pkgcheck_marg_likscheck_mcbette_stateest_marg_likest_marg_liksget_mcbette_stateget_test_marg_liksinterpret_bayes_factorinterpret_marg_lik_estimatesmcbette_reportmcbette_self_testplot_marg_liksset_mcbette_state

Dependencies:ade4apeaskpassbabettebase64encbeastierbeautierbitbit64brewbriobslibcachemcallrclicliprcommonmarkcpp11crayoncredentialscurldescdevtoolsdiffobjdigestdownlitellipsisevaluatefansifastmapfastmatchfontawesomefsgenericsgertghgitcredsgluegmphighrhmshtmltoolshtmlwidgetshttpuvhttr2igraphinijquerylibjsonliteknitrlaterlatticelifecyclemagrittrMASSMatrixmauricermemoisemimeminiUInlmeopensslphangornpillarpixmappkgbuildpkgconfigpkgdownpkgloadpraiseprettyunitsprocessxprofvisprogresspromisespspurrrquadprogR6raggrappdirsrcmdcheckRcppRcppArmadilloreadrremotesrJavarlangrmarkdownRmpfrroxygen2rprojrootrstudioapirversionssasssegmentedseqinrsessioninfoshinysourcetoolsspstringistringrsyssystemfontstestittestthattextshapingtibbletidyselecttinytextracerertxtplottzdburlcheckerusethisutf8vctrsvroomwaldowhiskerwithrxfunxml2xopenxtableyamlzip

Demo

Richèl J.C. Bilderbeek

Rendered fromdemo.Rmdusingknitr::rmarkdownon Jun 28 2025.

Last update: 2022-08-26
Started: 2020-01-14