Package: rmangal 2.1.3
Kevin Cazelles
rmangal: 'Mangal' Client
An interface to the 'Mangal' database - a collection of ecological networks. This package includes functions to work with the 'Mangal RESTful API' methods (<https://mangal-interactions.github.io/mangal-api/>).
Authors:
rmangal_2.1.3.tar.gz
rmangal_2.1.3.zip(r-4.5)rmangal_2.1.3.zip(r-4.4)rmangal_2.1.3.zip(r-4.3)
rmangal_2.1.3.tgz(r-4.4-any)rmangal_2.1.3.tgz(r-4.3-any)
rmangal_2.1.3.tar.gz(r-4.5-noble)rmangal_2.1.3.tar.gz(r-4.4-noble)
rmangal_2.1.3.tgz(r-4.4-emscripten)rmangal_2.1.3.tgz(r-4.3-emscripten)
rmangal.pdf |rmangal.html✨
rmangal/json (API)
NEWS
| # Install 'rmangal' in R: |
| install.packages('rmangal', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/rmangal/issues
Pkgdown:https://docs.ropensci.org
ecologynetworksfood websinteractionsdata publicationsopen access
Last updated 12 months agofrom:515b8b3cc7 (on main). Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 27 2024 |
| R-4.5-win | OK | Nov 27 2024 |
| R-4.5-linux | OK | Nov 27 2024 |
| R-4.4-win | OK | Nov 27 2024 |
| R-4.4-mac | OK | Nov 27 2024 |
| R-4.3-win | OK | Nov 27 2024 |
| R-4.3-mac | OK | Nov 27 2024 |
Exports:as.igraphclear_cache_rmangalcombine_mgNetworksget_citationget_collectionget_network_by_idget_network_by_id_indivsearch_datasetssearch_interactionssearch_networkssearch_networks_sfsearch_nodessearch_referencessearch_taxonomy
Dependencies:askpasscachemclicpp11curlfastmapgluehttrigraphjsonlitelatticelifecyclemagrittrMatrixmemoisemimeopensslpkgconfigR6rlangsysvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Coerce 'mgNetworksCollection' or 'mgNetwork' objects to 'igraph' objects. | as.igraph.mgNetwork as.igraph.mgNetworksCollection |
| List interactions type contains in mangal-db | avail_type |
| Clear memoise cache | clear_cache_rmangal |
| Combine Mangal networks | combine_mgNetworks |
| Retrieve all references pertaining to the networks collection or individual network | get_citation get_citation.mgNetwork get_citation.mgNetworksCollection |
| Get a collection of networks | get_collection get_collection.default get_collection.mgSearchDatasets get_collection.mgSearchInteractions get_collection.mgSearchNetworks get_collection.mgSearchNodes get_collection.mgSearchReferences get_collection.mgSearchTaxonomy |
| Retrieve network information, nodes, edges and references for a given set of Mangal network IDs | get_network_by_id get_network_by_id_indiv print.mgNetwork print.mgNetworksCollection summary.mgNetwork summary.mgNetworksCollection |
| Query datasets | search_datasets |
| Query interactions | search_interactions |
| Query networks | search_networks search_networks_sf |
| Query nodes | search_nodes |
| Query references | search_references |
| Query taxonomy | search_taxonomy |
