Package: CoordinateCleaner 3.0.1
CoordinateCleaner: Automated Cleaning of Occurrence Records from Biological Collections
Automated flagging of common spatial and temporal errors in biological and paleontological collection data, for the use in conservation, ecology and paleontology. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets. The reference for the methodology is: Zizka et al. (2019) <doi:10.1111/2041-210X.13152>.
Authors:
CoordinateCleaner_3.0.1.tar.gz
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CoordinateCleaner_3.0.1.tgz(r-4.4-any)CoordinateCleaner_3.0.1.tgz(r-4.3-any)
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CoordinateCleaner.pdf |CoordinateCleaner.html✨
CoordinateCleaner/json (API)
NEWS
# Install 'CoordinateCleaner' in R: |
install.packages('CoordinateCleaner', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/coordinatecleaner/issues
- aohi - Artificial Hotspot Occurrence Inventory
- buffland - Global Coastlines buffered by 1 degree
- buffsea - Global Coastlines buffered by -1 degree
- countryref - Country Centroids and Country Capitals
- institutions - Global Locations of Biodiversity Institutions
- pbdb_example - Example data from the Paleobiologydatabase
Last updated 7 months agofrom:ebd2b669d6 (on master). Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 28 2024 |
R-4.5-win | NOTE | Sep 28 2024 |
R-4.5-linux | NOTE | Sep 28 2024 |
R-4.4-win | NOTE | Sep 28 2024 |
R-4.4-mac | NOTE | Sep 28 2024 |
R-4.3-win | NOTE | Sep 28 2024 |
R-4.3-mac | NOTE | Sep 28 2024 |
Exports:cc_aohicc_capcc_cencc_councc_duplcc_equcc_gbifcc_instcc_iucncc_outlcc_seacc_urbcc_valcc_zerocd_ddmmcd_roundcf_agecf_equalcf_outlcf_rangeclean_coordinatesclean_datasetclean_fossilsis.spatialvalidwrite_pyrate
Dependencies:askpassclassclassIntclicolorspacecrulcurldata.tableDBIdplyre1071fansifarvergenericsgeosphereggplot2gluegtablehttpcodehttrisobandjsonliteKernSmoothlabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeoaiopensslpillarpkgconfigplyrproxyR6RColorBrewerRcpprgbifrlangrnaturalearths2scalessfspstringistringrsysterratibbletidyselecttriebeardunitsurltoolsutf8vctrsviridisLitewhiskerwithrwkxml2
Cleaning fossil data for the use in biogeography and palaeontology
Rendered fromCleaning_PBDB_fossils_with_CoordinateCleaner.Rmd
usingknitr::rmarkdown
on Sep 28 2024.Last update: 2023-08-31
Started: 2018-06-05
Cleaning GBIF data for the use in biogeography
Rendered fromCleaning_GBIF_data_with_CoordinateCleaner.Rmd
usingknitr::rmarkdown
on Sep 28 2024.Last update: 2023-10-24
Started: 2018-07-16
Comparison of CoordinateCleaner to other tools
Rendered fromComparison_other_software.Rmd
usingknitr::rmarkdown
on Sep 28 2024.Last update: 2023-09-30
Started: 2020-10-09
Using customized gazetteers
Rendered fromUsing_custom_gazetteers.Rmd
usingknitr::rmarkdown
on Sep 28 2024.Last update: 2023-08-31
Started: 2020-08-18